View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10954A_low_151 (Length: 333)
Name: NF10954A_low_151
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_151 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 6 - 321
Target Start/End: Complemental strand, 7654253 - 7653938
Alignment:
| Q |
6 |
agccttaacatttgaggacaaacagaactgaccaagtttatttttaatgcattttagtttcaaaataatatagtggcgatgcaatggaatgagtgtgata |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7654253 |
agccttaacatttgaggacaaacagaactgaccaagtttatttttaatgcattttagtttcaaaataatatagtggcgatgcaatggaatgagtgtgata |
7654154 |
T |
|
| Q |
106 |
tatattataaattgtgttgtgacatgagtaaggagacattttgtatacgagtgttagaaaagtaaatcatgattgctagccacatatactttcatattaa |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
7654153 |
tatattataaattgtgttgtgacatgagtaaggagacattttgtatacgagtgttagaaaagtaaatcatgattgctaatcacatatactttcatattaa |
7654054 |
T |
|
| Q |
206 |
tcatcaatgtatcaatagtatccttcaagtgggtttcttgcacaagatggnnnnnnnnnnnnnnnnnnggtttctaatatgtttcttgcacaagaagtaa |
305 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
7654053 |
tcatcaatgtatcaataatatccttcaagtgggtttcttgcacaagatggttttcttttttactttttggtttctaatatgtttcttgcacaagaagtaa |
7653954 |
T |
|
| Q |
306 |
tcctattcgagatatt |
321 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
7653953 |
tcctattcgagatatt |
7653938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University