View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10954A_low_152 (Length: 329)
Name: NF10954A_low_152
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_152 |
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Alignment Details
Target: chr6 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 11 - 323
Target Start/End: Complemental strand, 30708376 - 30708065
Alignment:
| Q |
11 |
atgaagtacagaggtgcaataagaaacttgattgaacttgagggtcttggctgcaccatcatacacgaagtggatgttcacaacatgaatcaacaccatc |
110 |
Q |
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| T |
30708376 |
atgaagtacagaggtgcaataagaaacttgattgaacttgagggtcttggctgcaccatcatgcacgaagtggatgttcacaacatgaatcaacaccatc |
30708277 |
T |
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| Q |
111 |
aactcaaacaccacaannnnnnngatcgaataatctttaattttcctcattctggtttcttccaaaatgaaagtgatgcttgggtgatcgggtaagttaa |
210 |
Q |
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| T |
30708276 |
aactcaaacaccacaatttttttgatcgaataatctttaattttcctcattctggtttcttccaaaatgaaagtgatgcttgggtgatcgggtaagttaa |
30708177 |
T |
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| Q |
211 |
atagagagggtttttatcatgtgtaaattcgtatacattaagaagtttaacatagtaatttctcattttaacttatctattttttacttaaatatataac |
310 |
Q |
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| T |
30708176 |
atagagagggtttttattatgtgtaaattcgcattcgttaagaagtttaacatagtaatttttcattttaacttatatatttttta-ttaaatatataac |
30708078 |
T |
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| Q |
311 |
tttttaatggata |
323 |
Q |
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| T |
30708077 |
tttttaatggata |
30708065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 25 - 166
Target Start/End: Complemental strand, 30727494 - 30727353
Alignment:
| Q |
25 |
tgcaataagaaacttgattgaacttgagggtcttggctgcaccatcatacacgaagtggatgttcacaacatgaatcaacaccatcaactcaaacaccac |
124 |
Q |
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| T |
30727494 |
tgcaatatcaaacttggatgaacttgaaggtcttggctgcaccatcttgcacgaagtagacgttcacaacatgaaacaacaccattatctcaagcacagc |
30727395 |
T |
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| Q |
125 |
aannnnnnngatcgaataatctttaattttcctcattctggt |
166 |
Q |
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| T |
30727394 |
aatgattttcatcgaataatcttcaattttcctcattctggt |
30727353 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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