View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10954A_low_153 (Length: 328)

Name: NF10954A_low_153
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10954A_low_153
NF10954A_low_153
[»] chr7 (25 HSPs)
chr7 (1-153)||(17915649-17915801)
chr7 (1-105)||(8807528-8807629)
chr7 (23-200)||(2278184-2278363)
chr7 (65-166)||(2641637-2641738)
chr7 (35-142)||(19842387-19842494)
chr7 (5-151)||(20053297-20053443)
chr7 (235-307)||(7766831-7766903)
chr7 (83-164)||(19142741-19142822)
chr7 (83-164)||(20742140-20742221)
chr7 (235-310)||(11039472-11039547)
chr7 (235-310)||(23809963-23810038)
chr7 (35-162)||(48358027-48358153)
chr7 (233-311)||(1053363-1053441)
chr7 (237-310)||(5972748-5972821)
chr7 (235-308)||(30541766-30541839)
chr7 (241-310)||(38440732-38440801)
chr7 (35-158)||(17918776-17918898)
chr7 (234-309)||(27336711-27336786)
chr7 (155-196)||(8807490-8807531)
chr7 (235-306)||(33189165-33189236)
chr7 (236-310)||(2944355-2944429)
chr7 (247-293)||(15954928-15954974)
chr7 (241-307)||(47924760-47924826)
chr7 (59-159)||(10983675-10983775)
chr7 (249-297)||(31457128-31457176)
[»] chr3 (14 HSPs)
chr3 (22-144)||(21318525-21318647)
chr3 (235-310)||(13825676-13825751)
chr3 (23-166)||(13177777-13177920)
chr3 (23-166)||(13340677-13340820)
chr3 (237-310)||(21287883-21287956)
chr3 (40-166)||(15331249-15331374)
chr3 (234-310)||(12148800-12148876)
chr3 (232-310)||(4127768-4127846)
chr3 (235-307)||(25874992-25875064)
chr3 (245-307)||(5294991-5295053)
chr3 (254-310)||(36584164-36584220)
chr3 (236-307)||(27926909-27926980)
chr3 (110-166)||(9323659-9323715)
chr3 (232-310)||(48251929-48252007)
[»] chr6 (14 HSPs)
chr6 (58-166)||(19731547-19731655)
chr6 (235-310)||(5999310-5999385)
chr6 (233-307)||(10409217-10409291)
chr6 (235-303)||(7622139-7622207)
chr6 (23-172)||(14201350-14201491)
chr6 (235-306)||(32292666-32292737)
chr6 (235-310)||(8576518-8576593)
chr6 (93-157)||(10482168-10482232)
chr6 (235-307)||(34435084-34435156)
chr6 (88-166)||(17209072-17209150)
chr6 (34-88)||(21686950-21687004)
chr6 (34-162)||(239786-239912)
chr6 (235-307)||(10788341-10788415)
chr6 (235-310)||(28581916-28581991)
[»] chr2 (15 HSPs)
chr2 (23-196)||(8685682-8685857)
chr2 (5-158)||(16197361-16197514)
chr2 (236-310)||(45151508-45151582)
chr2 (235-310)||(13807340-13807415)
chr2 (35-129)||(24216080-24216174)
chr2 (1-107)||(25348192-25348298)
chr2 (34-162)||(22132173-22132299)
chr2 (235-310)||(13626582-13626657)
chr2 (56-196)||(16152157-16152299)
chr2 (34-164)||(26653075-26653204)
chr2 (236-297)||(31604613-31604674)
chr2 (234-310)||(42625299-42625374)
chr2 (235-310)||(5938503-5938578)
chr2 (237-303)||(5109982-5110048)
chr2 (235-283)||(5704398-5704446)
[»] chr1 (16 HSPs)
chr1 (11-161)||(9756439-9756590)
chr1 (235-310)||(29678603-29678678)
chr1 (234-310)||(25294208-25294284)
chr1 (235-310)||(47140556-47140631)
chr1 (34-162)||(24006169-24006296)
chr1 (235-310)||(48379375-48379450)
chr1 (235-297)||(25987171-25987233)
chr1 (254-307)||(19884710-19884763)
chr1 (235-309)||(2192071-2192145)
chr1 (236-310)||(31585516-31585590)
chr1 (235-303)||(36729036-36729104)
chr1 (235-307)||(38264606-38264678)
chr1 (236-310)||(17563069-17563143)
chr1 (236-306)||(31293040-31293110)
chr1 (236-303)||(11894077-11894144)
chr1 (34-159)||(19223669-19223792)
[»] scaffold0062 (1 HSPs)
scaffold0062 (1-164)||(2654-2818)
[»] chr4 (17 HSPs)
chr4 (38-166)||(22316639-22316767)
chr4 (7-166)||(5842711-5842871)
chr4 (233-310)||(51356950-51357027)
chr4 (254-310)||(23626623-23626679)
chr4 (235-310)||(41039101-41039176)
chr4 (236-307)||(19841513-19841584)
chr4 (236-310)||(22278078-22278152)
chr4 (235-304)||(36465098-36465167)
chr4 (235-310)||(8819586-8819661)
chr4 (236-310)||(42555099-42555171)
chr4 (34-144)||(16322148-16322257)
chr4 (257-310)||(24912934-24912987)
chr4 (257-310)||(24916618-24916671)
chr4 (234-310)||(40572178-40572252)
chr4 (232-292)||(17120565-17120625)
chr4 (254-310)||(38951389-38951445)
chr4 (254-310)||(40715150-40715206)
[»] chr8 (13 HSPs)
chr8 (5-196)||(23432822-23433017)
chr8 (21-166)||(5826356-5826501)
chr8 (235-310)||(7987511-7987586)
chr8 (1-166)||(5828955-5829126)
chr8 (235-306)||(7968719-7968790)
chr8 (23-121)||(18565905-18566003)
chr8 (237-310)||(31005784-31005857)
chr8 (234-310)||(8227512-8227588)
chr8 (34-162)||(13645324-13645450)
chr8 (34-162)||(13745749-13745875)
chr8 (235-310)||(11481201-11481276)
chr8 (235-294)||(9765287-9765346)
chr8 (235-310)||(36583174-36583249)
[»] chr5 (11 HSPs)
chr5 (11-164)||(21216327-21216481)
chr5 (235-310)||(35188881-35188956)
chr5 (235-310)||(42836750-42836825)
chr5 (235-310)||(3925979-3926054)
chr5 (3-152)||(24885122-24885271)
chr5 (234-310)||(39800688-39800764)
chr5 (235-310)||(39207383-39207458)
chr5 (234-310)||(40056751-40056827)
chr5 (32-155)||(9824308-9824430)
chr5 (235-307)||(23429005-23429077)
chr5 (34-121)||(21391183-21391270)
[»] scaffold0002 (1 HSPs)
scaffold0002 (23-166)||(129068-129211)
[»] scaffold0691 (1 HSPs)
scaffold0691 (234-310)||(7685-7761)
[»] scaffold0300 (2 HSPs)
scaffold0300 (21-133)||(7454-7566)
scaffold0300 (27-73)||(12232-12278)
[»] scaffold0115 (1 HSPs)
scaffold0115 (234-310)||(21832-21908)
[»] scaffold0041 (1 HSPs)
scaffold0041 (59-162)||(26515-26618)
[»] scaffold0711 (1 HSPs)
scaffold0711 (59-166)||(1568-1677)
[»] scaffold0057 (1 HSPs)
scaffold0057 (236-309)||(66366-66439)
[»] scaffold0155 (1 HSPs)
scaffold0155 (234-310)||(7161-7236)
[»] scaffold0527 (2 HSPs)
scaffold0527 (34-129)||(397-492)
scaffold0527 (34-129)||(8460-8555)
[»] scaffold0032 (1 HSPs)
scaffold0032 (35-129)||(79415-79509)


Alignment Details
Target: chr7 (Bit Score: 97; Significance: 1e-47; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 17915801 - 17915649
Alignment:
Q  1 tcagacacaaaatctgacttgctacttggatcagagggacccagaatccatgtaagcttttgtcttattctgtgagctatctctatcatagtatctgata 100  Q
    ||||||||| ||||||||| ||||||||||||  |||||||||||||||| ||||||||||||||||||||||||||| |||||  ||||||||||||||    
T  17915801 tcagacacataatctgactagctacttggatcttagggacccagaatccacgtaagcttttgtcttattctgtgagctgtctctgccatagtatctgata 17915702  T
Q  101 gagaagtgattttgtcttcttctgtctacatgtgcaaccagacagaggacatc 153  Q
    ||| |||| |||||||||||||||||||||||| ||||  |||| ||||||||    
T  17915701 gagtagtgcttttgtcttcttctgtctacatgtacaacacgacaaaggacatc 17915649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 8807629 - 8807528
Alignment:
Q  1 tcagacacaaaatctgacttgctacttggatcagagggacccagaatccatgtaagcttttgtcttattctgtgagctatctctatcatagtatctgata 100  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||   |||||||||||||||||||||| ||||||||||| |||||||||    
T  8807629 tcagacacaaaatctgactggctacttggatcagagggacccagaatccatgt---cttttgtcttattctgtgagctgtctctatcataatatctgata 8807533  T
Q  101 gagaa 105  Q
    |||||    
T  8807532 gagaa 8807528  T

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Target: chr7; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 23 - 200
Target Start/End: Complemental strand, 2278363 - 2278184
Alignment:
Q  23 tacttggatcagagggacccagaatccatgtaagcttttgtcttattctgtgagctatctctatcatagtatctgatagagaagtgattttgtcttcttc 122  Q
    ||||||||||  ||||||||||||||||  ||||||||||||||||| ||||||||| |||||||||||||| ||||| |  | | ||||||||||||||    
T  2278363 tacttggatccaagggacccagaatccacataagcttttgtcttattttgtgagctaactctatcatagtatatgataaatcaattattttgtcttcttc 2278264  T
Q  123 tgtctacatgtgcaaccagacagaggacatcaagaacaaagaga--gaaacacatcattcttattttagcaaaggacttt 200  Q
    ||||||| | |||||||| ||| ||||| |||||||||||||||  | |||| || |||||  ||| |||||||||||||    
T  2278263 tgtctacgtttgcaaccaaacaaaggacctcaagaacaaagagaatgcaacaaataattctattttcagcaaaggacttt 2278184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 65 - 166
Target Start/End: Original strand, 2641637 - 2641738
Alignment:
Q  65 ttattctgtgagctatctctatcatagtatctgatagagaagtgattttgtcttcttctgtctacatgtgcaaccagacagaggacatcaagaacaaaga 164  Q
    ||||||||||||||||||||||||||||||||||||||| |||  |||||||||||||||| ||  |||||||||||||| |||||||||||||||||||    
T  2641637 ttattctgtgagctatctctatcatagtatctgatagagcagttcttttgtcttcttctgtttatgtgtgcaaccagacaaaggacatcaagaacaaaga 2641736  T
Q  165 ga 166  Q
    ||    
T  2641737 ga 2641738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 35 - 142
Target Start/End: Original strand, 19842387 - 19842494
Alignment:
Q  35 agggacccagaatccatgtaagcttttgtcttattctgtgagctatctctatcatagtatctgatagagaagtgattttgtcttcttctgtctacatgtg 134  Q
    ||||| ||||||||||  ||||||||||| |||||||||||  | | |||||||||||||||||||||| |||  |||||||||||||||||||| |||     
T  19842387 agggagccagaatccacataagcttttgttttattctgtgaattgtgtctatcatagtatctgatagagcagttcttttgtcttcttctgtctacgtgta 19842486  T
Q  135 caaccaga 142  Q
    ||||||||    
T  19842487 caaccaga 19842494  T

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Target: chr7; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 5 - 151
Target Start/End: Complemental strand, 20053443 - 20053297
Alignment:
Q  5 acacaaaatctgacttgctacttggatcagagggacccagaatccatgtaagcttttgtcttattctgtgagctatctctatcatagtatctgatagaga 104  Q
    ||||||||| ||||| ||||||||||||  ||||||||| ||||||  |||||| || | ||||| |||||| |||||||||||||| |||||||| ||     
T  20053443 acacaaaatttgactggctacttggatctaagggacccataatccacataagctattttattattttgtgagttatctctatcatagcatctgatatagc 20053344  T
Q  105 agtgattttgtcttcttctgtctacatgtgcaaccagacagaggaca 151  Q
    |||  |||||||||||||  |  || ||| |||||||||| ||||||    
T  20053343 agttcttttgtcttcttccataaacgtgttcaaccagacaaaggaca 20053297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 235 - 307
Target Start/End: Complemental strand, 7766903 - 7766831
Alignment:
Q  235 ggatatggataggatacagatttcatatttatccaacggagcggacacatatatcacactatctgcatccatg 307  Q
    ||||||||||| |||||| ||||||||||||||||||||||||||||   ||||||||||||| |||||||||    
T  7766903 ggatatggataagatacatatttcatatttatccaacggagcggacatgaatatcacactatccgcatccatg 7766831  T

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Target: chr7; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 83 - 164
Target Start/End: Original strand, 19142741 - 19142822
Alignment:
Q  83 ctatcatagtatctgatagagaagtgattttgtcttcttctgtctacatgtgcaaccagacagaggacatcaagaacaaaga 164  Q
    |||| ||||||||||||| || |||  |||||||||||||||||||| ||||||| |||||| ||||| |||||||||||||    
T  19142741 ctataatagtatctgataaagtagttcttttgtcttcttctgtctacgtgtgcaaacagacaaaggacctcaagaacaaaga 19142822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 83 - 164
Target Start/End: Original strand, 20742140 - 20742221
Alignment:
Q  83 ctatcatagtatctgatagagaagtgattttgtcttcttctgtctacatgtgcaaccagacagaggacatcaagaacaaaga 164  Q
    |||| ||||||||||||| || |||  |||||||||||||||||||| ||||||| |||||| ||||| |||||||||||||    
T  20742140 ctataatagtatctgataaagtagttcttttgtcttcttctgtctacgtgtgcaaacagacaaaggacctcaagaacaaaga 20742221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 235 - 310
Target Start/End: Original strand, 11039472 - 11039547
Alignment:
Q  235 ggatatggataggatacagatttcatatttatccaacggagcggacacatatatcacactatctgcatccatggat 310  Q
    ||||||||||| | |||| |||||||||||||||||||||| ||||||  |||||| | |||||||||||||||||    
T  11039472 ggatatggatatggtacaaatttcatatttatccaacggagtggacacggatatcatattatctgcatccatggat 11039547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 235 - 310
Target Start/End: Original strand, 23809963 - 23810038
Alignment:
Q  235 ggatatggataggatacagatttcatatttatccaacggagcggacacatatatcacactatctgcatccatggat 310  Q
    ||||||||||||| ||| ||||||||||||||| ||||||| ||||||  ||||| ||||||| ||||||||||||    
T  23809963 ggatatggatagggtacggatttcatatttatctaacggagtggacacggatatcgcactatccgcatccatggat 23810038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 35 - 162
Target Start/End: Original strand, 48358027 - 48358153
Alignment:
Q  35 agggacccagaatccatgtaagcttttgtcttattctgtgagctatctctatcatagtatctgatagagaagtgattttgtcttcttctgtctacatgtg 134  Q
    ||||||||||||||||| ||  |||| ||||||||||| ||  |||| |||||||||||| |||||||  | |  |||||||||||||||||||| ||||    
T  48358027 agggacccagaatccatatatacttt-gtcttattctgggaattatccctatcatagtatgtgatagaacaattcttttgtcttcttctgtctacgtgtg 48358125  T
Q  135 caaccagacagaggacatcaagaacaaa 162  Q
    ||| || ||| ||||| |||| ||||||    
T  48358126 caaacatacaaaggacctcaataacaaa 48358153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 233 - 311
Target Start/End: Original strand, 1053363 - 1053441
Alignment:
Q  233 gtggatatggataggatacagatttcatatttatccaacggagcggacacatatatcacactatctgcatccatggatt 311  Q
    ||||||||| ||| |  ||||||||||||||| || || |||||||||||  |||||||||||||||||||||||||||    
T  1053363 gtggatatgaataaggcacagatttcatatttgtctaatggagcggacacggatatcacactatctgcatccatggatt 1053441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 237 - 310
Target Start/End: Complemental strand, 5972821 - 5972748
Alignment:
Q  237 atatggataggatacagatttcatatttatccaacggagcggacacatatatcacactatctgcatccatggat 310  Q
    ||||||||||| ||| ||||||||||||||| |||||||| |||||  ||||||||||||| |||| |||||||    
T  5972821 atatggatagggtacggatttcatatttatctaacggagcagacacggatatcacactatccgcattcatggat 5972748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 235 - 308
Target Start/End: Original strand, 30541766 - 30541839
Alignment:
Q  235 ggatatggataggatacagatttcatatttatccaacggagcggacacatatatcacactatctgcatccatgg 308  Q
    ||||||||||||| ||| ||||||||||| ||||||||||||||| ||  |||||| |||||| ||||||||||    
T  30541766 ggatatggatagggtacggatttcatattaatccaacggagcggatacgaatatcatactatccgcatccatgg 30541839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 241 - 310
Target Start/End: Original strand, 38440732 - 38440801
Alignment:
Q  241 ggataggatacagatttcatatttatccaacggagcggacacatatatcacactatctgcatccatggat 310  Q
    ||||| |||||  ||||||||||||||||||| |||||||||  ||||||||||||| ||||||||||||    
T  38440732 ggatatgatacgaatttcatatttatccaacgaagcggacacgaatatcacactatccgcatccatggat 38440801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 35 - 158
Target Start/End: Complemental strand, 17918898 - 17918776
Alignment:
Q  35 agggacccagaatccatgtaagcttttgtcttattctgtgagctatctctatcatagtatctgatagagaagtgattttgtcttcttctgtctacatgtg 134  Q
    ||||||||||||||||  |||||||| |||||||  |||||  | || ||||||||||||| ||||||| | |  |||| ||||||||||||||| ||||    
T  17918898 agggacccagaatccacataagcttt-gtcttatcatgtgaattgtccctatcatagtatccgatagagcatttcttttatcttcttctgtctacgtgtg 17918800  T
Q  135 caaccagacagaggacatcaagaa 158  Q
    ||| |||||| | ||| |||||||    
T  17918799 caaacagacaaatgacctcaagaa 17918776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 234 - 309
Target Start/End: Complemental strand, 27336786 - 27336711
Alignment:
Q  234 tggatatggataggatacagatttcatatttatccaacggagcggacacatatatcacactatctgcatccatgga 309  Q
    |||||||||||||| |   ||||||||||||||| |||| || ||||||  |||||||||||||||||||||||||    
T  27336786 tggatatggatagggtctggatttcatatttatctaacgaagtggacacggatatcacactatctgcatccatgga 27336711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 155 - 196
Target Start/End: Complemental strand, 8807531 - 8807490
Alignment:
Q  155 agaacaaagagagaaacacatcattcttattttagcaaagga 196  Q
    |||||||||||||| |||||||||||||||||||||||||||    
T  8807531 agaacaaagagagagacacatcattcttattttagcaaagga 8807490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 235 - 306
Target Start/End: Complemental strand, 33189236 - 33189165
Alignment:
Q  235 ggatatggataggatacagatttcatatttatccaacggagcggacacatatatcacactatctgcatccat 306  Q
    |||||| ||||||  ||| |||||||||||||| ||||||| ||||||  |||||| |||||||||||||||    
T  33189236 ggatattgatagggcacatatttcatatttatcaaacggagtggacacggatatcaaactatctgcatccat 33189165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 236 - 310
Target Start/End: Original strand, 2944355 - 2944429
Alignment:
Q  236 gatatggataggatacagatttcatatttatccaacggagcggacacatatatcacactatctgcatccatggat 310  Q
    |||||| ||||| ||||| ||||||| |||| |||| ||||||||||  ||||||||| |||  |||||||||||    
T  2944355 gatatgaatagggtacagttttcatacttatacaacagagcggacacggatatcacaccatccacatccatggat 2944429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 247 - 293
Target Start/End: Original strand, 15954928 - 15954974
Alignment:
Q  247 gatacagatttcatatttatccaacggagcggacacatatatcacac 293  Q
    |||||| |||| |||||||||||||||| |||||||| |||||||||    
T  15954928 gatacaaattttatatttatccaacggaacggacacagatatcacac 15954974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 307
Target Start/End: Complemental strand, 47924826 - 47924760
Alignment:
Q  241 ggataggatacagatttcatatttatccaacggagcggacacatatatcacactatctgcatccatg 307  Q
    ||||||| ||| |||||||||||||||||| | | ||||||| ||||| | ||||||| ||||||||    
T  47924826 ggatagggtacggatttcatatttatccaatgaaacggacacgtatattagactatctacatccatg 47924760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 159
Target Start/End: Original strand, 10983675 - 10983775
Alignment:
Q  59 tttgtcttattctgtgagctatctctatcatagtatctgatagagaagtgattttgtcttcttctgtctacatgtgcaaccagacagaggacatcaagaa 158  Q
    ||||| |||||||| || || |||||||||||  ||||| ||||  | |  || |||||||| |||||||| ||| |||||| ||| |||||||||||||    
T  10983675 tttgttttattctgcgaactgtctctatcataacatctggtagaacaattcttctgtcttctactgtctacgtgtacaaccacacaaaggacatcaagaa 10983774  T
Q  159 c 159  Q
    |    
T  10983775 c 10983775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 297
Target Start/End: Complemental strand, 31457176 - 31457128
Alignment:
Q  249 tacagatttcatatttatccaacggagcggacacatatatcacactatc 297  Q
    |||| ||||||||||||||||||  | |||||||| |||||||||||||    
T  31457176 tacatatttcatatttatccaacaaaacggacacaaatatcacactatc 31457128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 91; Significance: 4e-44; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 22 - 144
Target Start/End: Complemental strand, 21318647 - 21318525
Alignment:
Q  22 ctacttggatcagagggacccagaatccatgtaagcttttgtcttattctgtgagctatctctatcatagtatctgatagagaagtgattttgtcttctt 121  Q
    |||||||||| ||||| ||| |||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| ||||||||||||    
T  21318647 ctacttggattagaggaacctagaatccacgtaagcttttgtcttattctgtgagttatctctatcatagtatctgatagagtagtgcttttgtcttctt 21318548  T
Q  122 ctgtctacatgtgcaaccagaca 144  Q
    |||||||| ||||||||||||||    
T  21318547 ctgtctacgtgtgcaaccagaca 21318525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 235 - 310
Target Start/End: Complemental strand, 13825751 - 13825676
Alignment:
Q  235 ggatatggataggatacagatttcatatttatccaacggagcggacacatatatcacactatctgcatccatggat 310  Q
    ||||||||||||| ||| ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||    
T  13825751 ggatatggatagggtacggatttcatatttatctaacggagcggacacatatatcacactatccgcatccatggat 13825676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 23 - 166
Target Start/End: Original strand, 13177777 - 13177920
Alignment:
Q  23 tacttggatcagagggacccagaatccatgtaagcttttgtcttattctgtgagctatctctatcatagtatctgatagagaagtgattttgtcttcttc 122  Q
    |||||||||| |||||||||  ||| || ||||  |||||||| || ||||||||| ||| || | |||||| |||||||| |||  |||||||||||||    
T  13177777 tacttggatctgagggacccgaaatgcacgtaaatttttgtctaatactgtgagctgtctataccgtagtatttgatagaggagttcttttgtcttcttc 13177876  T
Q  123 tgtctacatgtgcaaccagacagaggacatcaagaacaaagaga 166  Q
    ||||||| |||||||| ||||| | ||| |||||||||||||||    
T  13177877 tgtctacgtgtgcaactagacaaatgacctcaagaacaaagaga 13177920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 23 - 166
Target Start/End: Original strand, 13340677 - 13340820
Alignment:
Q  23 tacttggatcagagggacccagaatccatgtaagcttttgtcttattctgtgagctatctctatcatagtatctgatagagaagtgattttgtcttcttc 122  Q
    |||||||||| |||||||||  ||| || ||||  |||||||| ||  |||||||| ||| || | ||||||||||||||| |||  |||||||||||||    
T  13340677 tacttggatctgagggacccgaaatgcaggtaaatttttgtctaatattgtgagctgtctataccgtagtatctgatagaggagttcttttgtcttcttc 13340776  T
Q  123 tgtctacatgtgcaaccagacagaggacatcaagaacaaagaga 166  Q
    ||||||| |||||||| ||||| ||||| | |||||||||||||    
T  13340777 tgtctacgtgtgcaactagacaaaggaccttaagaacaaagaga 13340820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 237 - 310
Target Start/End: Complemental strand, 21287956 - 21287883
Alignment:
Q  237 atatggataggatacagatttcatatttatccaacggagcggacacatatatcacactatctgcatccatggat 310  Q
    ||||||||||| ||| ||||||||||||||| ||||||| ||||||| ||||||||||||||||||||||||||    
T  21287956 atatggatagggtacggatttcatatttatctaacggaggggacacagatatcacactatctgcatccatggat 21287883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 40 - 166
Target Start/End: Original strand, 15331249 - 15331374
Alignment:
Q  40 cccagaatccatgtaagcttttgtcttattctgtgagctatctctatcatagtatctgatagagaagtgattttgtcttcttctgtctacatgtgcaacc 139  Q
    ||||||||||| ||||| |||||| || || |||||  | || ||||||| ||||||||||||| ||| ||||| ||||||| ||||||||||||||| |    
T  15331249 cccagaatccacgtaag-ttttgttttgttttgtgaattgtccctatcattgtatctgatagagcagttattttctcttcttttgtctacatgtgcaaac 15331347  T
Q  140 agacagaggacatcaagaacaaagaga 166  Q
    | ||| ||||| |||||||||||||||    
T  15331348 aaacaaaggacctcaagaacaaagaga 15331374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 234 - 310
Target Start/End: Complemental strand, 12148876 - 12148800
Alignment:
Q  234 tggatatggataggatacagatttcatatttatccaacggagcggacacatatatcacactatctgcatccatggat 310  Q
    |||||||||||||| ||| ||||||||||||||| ||||||| ||||||  ||||||||||||| ||||||||||||    
T  12148876 tggatatggatagggtacggatttcatatttatctaacggagtggacacggatatcacactatccgcatccatggat 12148800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 232 - 310
Target Start/End: Complemental strand, 4127846 - 4127768
Alignment:
Q  232 cgtggatatggataggatacagatttcatatttatccaacggagcggacacatatatcacactatctgcatccatggat 310  Q
    |||| ||||||||||| | | |||||||||||||||||||||| |||||||  ||||||||||||| ||||||||||||    
T  4127846 cgtgaatatggatagggttcggatttcatatttatccaacggaacggacacggatatcacactatccgcatccatggat 4127768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 235 - 307
Target Start/End: Original strand, 25874992 - 25875064
Alignment:
Q  235 ggatatggataggatacagatttcatatttatccaacggagcggacacatatatcacactatctgcatccatg 307  Q
    ||||||||||||| ||| |||||||| |||||| ||||||||||||||  |||||||||||||  ||||||||    
T  25874992 ggatatggatagggtacggatttcatctttatctaacggagcggacacggatatcacactatccacatccatg 25875064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 245 - 307
Target Start/End: Complemental strand, 5295053 - 5294991
Alignment:
Q  245 aggatacagatttcatatttatccaacggagcggacacatatatcacactatctgcatccatg 307  Q
    |||||| |||||||||||||||| ||||||| ||||||  ||||||||||||| |||||||||    
T  5295053 aggatatagatttcatatttatctaacggaggggacacggatatcacactatccgcatccatg 5294991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 254 - 310
Target Start/End: Complemental strand, 36584220 - 36584164
Alignment:
Q  254 atttcatatttatccaacggagcggacacatatatcacactatctgcatccatggat 310  Q
    ||||||||||||||||| ||||| || ||| |||||| |||||||||||||||||||    
T  36584220 atttcatatttatccaatggagcagatacagatatcatactatctgcatccatggat 36584164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 236 - 307
Target Start/End: Original strand, 27926909 - 27926980
Alignment:
Q  236 gatatggataggatacagatttcatatttatccaacggagcggacacatatatcacactatctgcatccatg 307  Q
    ||||| |||||  |||| |||||||||||||| ||||||||||||||  |||| ||||||||| ||||||||    
T  27926909 gatatagatagagtacatatttcatatttatctaacggagcggacacggatatgacactatctacatccatg 27926980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 166
Target Start/End: Complemental strand, 9323715 - 9323659
Alignment:
Q  110 ttttgtcttcttctgtctacatgtgcaaccagacagaggacatcaagaacaaagaga 166  Q
    |||||||||||||||||||| ||||||| || ||| | ||| |||||||||||||||    
T  9323715 ttttgtcttcttctgtctacgtgtgcaaacaaacaaatgacctcaagaacaaagaga 9323659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 310
Target Start/End: Original strand, 48251929 - 48252007
Alignment:
Q  232 cgtggatatggataggatacagatttcatatttatccaacggagcggacacatatatcacactatctgcatccatggat 310  Q
    ||||||||| |||||| |||  ||||||||||||||||||||| |||| |   |||||||||||||  ||| |||||||    
T  48251929 cgtggatatcgatagggtacgaatttcatatttatccaacggaacggatatggatatcacactatccacattcatggat 48252007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 89; Significance: 7e-43; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 58 - 166
Target Start/End: Complemental strand, 19731655 - 19731547
Alignment:
Q  58 ttttgtcttattctgtgagctatctctatcatagtatctgatagagaagtgattttgtcttcttctgtctacatgtgcaaccagacagaggacatcaaga 157  Q
    |||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |||||||||||||| ||||||||||||    
T  19731655 ttttgtctcattctgtgagctatctctatcatagtatctgatagagcagttattttgtcttcttctgtctacgtgtgcaaccagacaaaggacatcaaga 19731556  T
Q  158 acaaagaga 166  Q
    |||||||||    
T  19731555 acaaagaga 19731547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 235 - 310
Target Start/End: Complemental strand, 5999385 - 5999310
Alignment:
Q  235 ggatatggataggatacagatttcatatttatccaacggagcggacacatatatcacactatctgcatccatggat 310  Q
    ||||||||||||| ||| ||||||||||||||| ||||||||||||||  ||||||||||||| ||||||||||||    
T  5999385 ggatatggatagggtacggatttcatatttatctaacggagcggacacggatatcacactatccgcatccatggat 5999310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 233 - 307
Target Start/End: Original strand, 10409217 - 10409291
Alignment:
Q  233 gtggatatggataggatacagatttcatatttatccaacggagcggacacatatatcacactatctgcatccatg 307  Q
    ||||||||||||||| ||| ||||| ||||||||||||||||||| |||||||||||||||||||  ||||||||    
T  10409217 gtggatatggatagggtacggattttatatttatccaacggagcgaacacatatatcacactatcatcatccatg 10409291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 235 - 303
Target Start/End: Complemental strand, 7622207 - 7622139
Alignment:
Q  235 ggatatggataggatacagatttcatatttatccaacggagcggacacatatatcacactatctgcatc 303  Q
    ||||||||||| | |||||||||||||||||| ||||||| |||||||| |||||||||||||||||||    
T  7622207 ggatatggataaggtacagatttcatatttattcaacggaacggacacagatatcacactatctgcatc 7622139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 23 - 172
Target Start/End: Complemental strand, 14201491 - 14201350
Alignment:
Q  23 tacttggatcagagggacccagaatccatgtaagcttttgtcttattctgtgagctatctctatcatagtatctgatagagaagtgattttgtcttcttc 122  Q
    ||||| |||| ||||||| || ||| || ||||||||||||| ||||||||||  | |||||||||| |||||||||||||        |||||||||||    
T  14201491 tactttgatctgagggactcataattcacgtaagcttttgtcatattctgtgatatgtctctatcatggtatctgatagag--------ttgtcttcttc 14201400  T
Q  123 tgtctacatgtgcaaccagacagaggacatcaagaacaaagagagaaaca 172  Q
    ||||||| ||| | |||||||| ||||||||| |||| ||||||| ||||    
T  14201399 tgtctacgtgtactaccagacaaaggacatcaggaacgaagagagcaaca 14201350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 235 - 306
Target Start/End: Original strand, 32292666 - 32292737
Alignment:
Q  235 ggatatggataggatacagatttcatatttatccaacggagcggacacatatatcacactatctgcatccat 306  Q
    ||||||||||||| ||  ||||||||||||||||||||||||||||||  |||||| |||||| ||||||||    
T  32292666 ggatatggatagggtatggatttcatatttatccaacggagcggacacggatatcatactatccgcatccat 32292737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 235 - 310
Target Start/End: Complemental strand, 8576593 - 8576518
Alignment:
Q  235 ggatatggataggatacagatttcatatttatccaacggagcggacacatatatcacactatctgcatccatggat 310  Q
    ||||||||||||  ||| ||||||||||||||  |||||| |||||||  ||||||||||||| ||||||||||||    
T  8576593 ggatatggatagagtacggatttcatatttatttaacggaacggacacggatatcacactatccgcatccatggat 8576518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 93 - 157
Target Start/End: Complemental strand, 10482232 - 10482168
Alignment:
Q  93 atctgatagagaagtgattttgtcttcttctgtctacatgtgcaaccagacagaggacatcaaga 157  Q
    ||||||||||| ||| ||||| ||||||||||||||| ||||||| |||||| ||||| ||||||    
T  10482232 atctgatagagcagttattttatcttcttctgtctacgtgtgcaaacagacaaaggacctcaaga 10482168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 235 - 307
Target Start/End: Original strand, 34435084 - 34435156
Alignment:
Q  235 ggatatggataggatacagatttcatatttatccaacggagcggacacatatatcacactatctgcatccatg 307  Q
    |||||| |||||| || |||||||||||||||| || |||||||| ||  ||||||||||||| |||||||||    
T  34435084 ggatatagatagggtagagatttcatatttatctaatggagcggatacggatatcacactatccgcatccatg 34435156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 88 - 166
Target Start/End: Complemental strand, 17209150 - 17209072
Alignment:
Q  88 atagtatctgatagagaagtgattttgtcttcttctgtctacatgtgcaaccagacagaggacatcaagaacaaagaga 166  Q
    ||||||||| ||||||||||  |||||||||||||| ||||| | ||||| |||||| || || |||||||||| ||||    
T  17209150 atagtatctaatagagaagttcttttgtcttcttctatctacgtctgcaaacagacaaagcacctcaagaacaatgaga 17209072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 34 - 88
Target Start/End: Original strand, 21686950 - 21687004
Alignment:
Q  34 gagggacccagaatccatgtaagcttttgtcttattctgtgagctatctctatca 88  Q
    |||||||||| |||||| ||| ||||||||||||||||||||||| |||| ||||    
T  21686950 gagggacccaaaatccacgtatgcttttgtcttattctgtgagctgtctcaatca 21687004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 162
Target Start/End: Original strand, 239786 - 239912
Alignment:
Q  34 gagggacccagaatccatgtaagcttttgtcttattctgtgagctatctctatcatagtatctgatagagaagtgattttgtcttcttctgtctacatgt 133  Q
    ||||||||||||||||| ||| | |||||| || || ||||| || || |||||| || ||||| ||||| | |  |||||||||||||||||||| |||    
T  239786 gagggacccagaatccacgta-gattttgtattcttttgtgaactgtccctatcaaaggatctgctagaggaatttttttgtcttcttctgtctacgtgt 239884  T
Q  134 gcaaccagacagaggacatcaagaacaaa 162  Q
    ||||  ||||| ||||| |||||| ||||    
T  239885 gcaaatagaca-aggacctcaagagcaaa 239912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 235 - 307
Target Start/End: Complemental strand, 10788415 - 10788341
Alignment:
Q  235 ggatatggataggatacagatttcatatttatccaacggagcggacaca--tatatcacactatctgcatccatg 307  Q
    ||||||||||||| ||  |||||||| |||||| |||||||||||||||   ||||||||||||| |||| ||||    
T  10788415 ggatatggatagggtatggatttcatgtttatctaacggagcggacacacggatatcacactatccgcatacatg 10788341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 235 - 310
Target Start/End: Complemental strand, 28581991 - 28581916
Alignment:
Q  235 ggatatggataggatacagatttcatatttatccaacggagcggacacatatatcacactatctgcatccatggat 310  Q
    ||||||| ||||| ||  ||||||||||||||| |||||||| ||||   |||||||||||||  |||||||||||    
T  28581991 ggatatgaatagggtatggatttcatatttatctaacggagcagacatggatatcacactatccacatccatggat 28581916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 85; Significance: 2e-40; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 23 - 196
Target Start/End: Complemental strand, 8685857 - 8685682
Alignment:
Q  23 tacttggatcagagggacccagaatccatgtaagcttttgtcttattctgtgagctatctctatcatagtatctgatagagaagtgattttgtcttcttc 122  Q
    |||||||||  ||||||||  ||||| | |||||||||||||||||| |||||| | ||||||||||||||||| ||||||||||  ||||||||| |||    
T  8685857 tacttggatatgagggaccaggaatctacgtaagcttttgtcttattatgtgagttttctctatcatagtatctaatagagaagtttttttgtcttattc 8685758  T
Q  123 tgtctacatgtgcaaccagacagaggacatcaagaacaaagaga--gaaacacatcattcttattttagcaaagga 196  Q
    ||||||||||||||| |||||| ||||| |||||||||||||||  | |||| || |||||| |||||||||||||    
T  8685757 tgtctacatgtgcaaacagacaaaggacctcaagaacaaagagaatgtaacaaataattcttcttttagcaaagga 8685682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 5 - 158
Target Start/End: Original strand, 16197361 - 16197514
Alignment:
Q  5 acacaaaatctgacttgctacttggatcagagggacccagaatccatgtaagcttttgtcttattctgtgagctatctctatcatagtatctgatagaga 104  Q
    ||||| ||||||||| | |||||||||| ||||||| || ||||||||||| ||||| ||||||| |||| | | || |||||||| ||||||||||||     
T  16197361 acacagaatctgactgggtacttggatctgagggactcataatccatgtaaacttttatcttattttgtgtgttgtcactatcataatatctgatagagc 16197460  T
Q  105 agtgattttgtcttcttctgtctacatgtgcaaccagacagaggacatcaagaa 158  Q
    |||  |||||||| ||||||||||| | | |||| ||||| |||||||||||||    
T  16197461 agttcttttgtctccttctgtctacgtatacaactagacaaaggacatcaagaa 16197514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 236 - 310
Target Start/End: Original strand, 45151508 - 45151582
Alignment:
Q  236 gatatggataggatacagatttcatatttatccaacggagcggacacatatatcacactatctgcatccatggat 310  Q
    |||||| ||||||||||||||||||||||||| ||| ||||||||||  ||||||||||||| |||| |||||||    
T  45151508 gatatgaataggatacagatttcatatttatctaacagagcggacacggatatcacactatccgcatgcatggat 45151582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 235 - 310
Target Start/End: Complemental strand, 13807415 - 13807340
Alignment:
Q  235 ggatatggataggatacagatttcatatttatccaacggagcggacacatatatcacactatctgcatccatggat 310  Q
    ||||||||||||||||| |||||||||||| || ||||  ||||||||| ||||||||||||| || |||||||||    
T  13807415 ggatatggataggatacggatttcatatttttctaacgaggcggacacagatatcacactatccgcgtccatggat 13807340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 35 - 129
Target Start/End: Complemental strand, 24216174 - 24216080
Alignment:
Q  35 agggacccagaatccatgtaagcttttgtcttattctgtgagctatctctatcatagtatctgatagagaagtgattttgtcttcttctgtctac 129  Q
    |||||||||||||||| |||||||||||||||||||| |||| | |||||||||  | |||| | |||| |   |||||||||||||||||||||    
T  24216174 agggacccagaatccacgtaagcttttgtcttattctatgagttgtctctatcagtgcatctaacagagcaactattttgtcttcttctgtctac 24216080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 25348298 - 25348192
Alignment:
Q  1 tcagacacaaaatctgacttgctacttggatcagagggacccagaatccatgtaagcttttgtcttattctgtgagctatctctatcatagtatctgata 100  Q
    |||||| |||||| ||||  | || |||||||  ||||||| |||||||| ||||| |||||| |||||||||||| | |||||||||||| ||||| ||    
T  25348298 tcagacgcaaaatttgacaggataattggatctcagggacctagaatccacgtaagattttgtgttattctgtgagttgtctctatcatagcatctggta 25348199  T
Q  101 gagaagt 107  Q
    |||||||    
T  25348198 gagaagt 25348192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 34 - 162
Target Start/End: Original strand, 22132173 - 22132299
Alignment:
Q  34 gagggacccagaatccatgtaagcttttgtcttattctgtgagctatctctatcatagtatctgatagagaagtgattttgtcttcttctgtctacatgt 133  Q
    ||||||||||||||||| ||| | |||| |||| ||  |||| || || |||||| || || |||||||| |||  |||||||||||||||||||| |||    
T  22132173 gagggacccagaatccacgtaggttttt-tcttctttagtgaactgtccctatcaaaggatatgatagagcagtt-ttttgtcttcttctgtctacgtgt 22132270  T
Q  134 gcaaccagacagaggacatcaagaacaaa 162  Q
    |||| |||||| ||||| |||||||||||    
T  22132271 gcaaacagacaaaggacctcaagaacaaa 22132299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 235 - 310
Target Start/End: Original strand, 13626582 - 13626657
Alignment:
Q  235 ggatatggataggatacagatttcatatttatccaacggagcggacacatatatcacactatctgcatccatggat 310  Q
    ||||||||||||| ||| ||||||||||||||| |||| | |||||||  ||||||||||||| ||||| ||||||    
T  13626582 ggatatggatagggtacggatttcatatttatctaacgaaacggacacgaatatcacactatccgcatctatggat 13626657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 56 - 196
Target Start/End: Original strand, 16152157 - 16152299
Alignment:
Q  56 gcttttgtcttattctgtgagctatctctatcatagtatctgatagagaagtgattttgtcttcttctgtctacatgtgcaaccagacagaggacatcaa 155  Q
    |||||||||||||||| |||  | |||||||||||||||||||||||| |||  |||||| | ||||| ||||   ||| ||||||||| | ||| ||||    
T  16152157 gcttttgtcttattctttgatttgtctctatcatagtatctgatagagtagttcttttgtatacttctatctatgcgtgaaaccagacataagacttcaa 16152256  T
Q  156 gaacaaagaga--gaaacacatcattcttattttagcaaagga 196  Q
    ||||||| |||  | |||| || |||||| ||| |||||||||    
T  16152257 gaacaaaaagaatgcaacatataattcttctttcagcaaagga 16152299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 34 - 164
Target Start/End: Original strand, 26653075 - 26653204
Alignment:
Q  34 gagggacccagaatccatgtaagcttttgtcttattctgtgagctatctctatcatagtatctgatagagaagtgattttgtcttcttctgtctacatgt 133  Q
    |||||||||| |||||||||| | |||| |||| || || |  || |||||||||| ||||| ||||||| |||  || || |||||||||||||| |||    
T  26653075 gagggacccaaaatccatgta-gattttttcttcttatgggcactgtctctatcatcgtatcagatagagcagttcttatgccttcttctgtctacgtgt 26653173  T
Q  134 gcaaccagacagaggacatcaagaacaaaga 164  Q
    |||| || ||| ||||| |||||||||||||    
T  26653174 gcaaacaaacaaaggacctcaagaacaaaga 26653204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 236 - 297
Target Start/End: Complemental strand, 31604674 - 31604613
Alignment:
Q  236 gatatggataggatacagatttcatatttatccaacggagcggacacatatatcacactatc 297  Q
    ||||| |||| | |||| ||||||||||||||||||||||| |||||| |||||||||||||    
T  31604674 gatatagataaggtacaaatttcatatttatccaacggagcagacacaaatatcacactatc 31604613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 234 - 310
Target Start/End: Original strand, 42625299 - 42625374
Alignment:
Q  234 tggatatggataggatacagatttcatatttatccaacggagcggacacatatatcacactatctgcatccatggat 310  Q
    |||||||||||||| ||| ||||||||||||||| ||| ||| ||||||  |||||||||| || ||||||||||||    
T  42625299 tggatatggatagggtacggatttcatatttatctaac-gagtggacacggatatcacactctccgcatccatggat 42625374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 235 - 310
Target Start/End: Complemental strand, 5938578 - 5938503
Alignment:
Q  235 ggatatggataggatacagatttcatatttatccaacggagcggacacatatatcacactatctgcatccatggat 310  Q
    ||||||||||||| |||  |||||||||||||| ||||||| ||||||  ||||||||||||   |||||||||||    
T  5938578 ggatatggatagggtacgaatttcatatttatctaacggagtggacacggatatcacactattcacatccatggat 5938503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 237 - 303
Target Start/End: Complemental strand, 5110048 - 5109982
Alignment:
Q  237 atatggataggatacagatttcatatttatccaacggagcggacacatatatcacactatctgcatc 303  Q
    |||||||||| |||| |||||||||||||||  || ||||| ||||| ||||||||||||| |||||    
T  5110048 atatggatagaatacggatttcatatttatctgacagagcgcacacaaatatcacactatccgcatc 5109982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 283
Target Start/End: Complemental strand, 5704446 - 5704398
Alignment:
Q  235 ggatatggataggatacagatttcatatttatccaacggagcggacaca 283  Q
    |||||| |||||  ||||||||||||||||||| || ||||||||||||    
T  5704446 ggatatagatagagtacagatttcatatttatctaatggagcggacaca 5704398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 84; Significance: 7e-40; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 11 - 161
Target Start/End: Original strand, 9756439 - 9756590
Alignment:
Q  11 aatctgacttg-ctacttggatcagagggacccagaatccatgtaagcttttgtcttattctgtgagctatctctatcatagtatctgatagagaagtga 109  Q
    ||||||||||| ||||||||||  |||||||||||| |||| ||||||||||||||||||||||||| | ||||||| |||||||||||||||||||| |    
T  9756439 aatctgacttggctacttggatacgagggacccagattccacgtaagcttttgtcttattctgtgagttgtctctataatagtatctgatagagaagtta 9756538  T
Q  110 ttttgtcttcttctgtctacatgtgcaaccagacagaggacatcaagaacaa 161  Q
    ||||||||| |||||||||  ||| ||| ||||||  |||||||||||||||    
T  9756539 ttttgtctttttctgtctatgtgtacaaacagacaacggacatcaagaacaa 9756590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 235 - 310
Target Start/End: Original strand, 29678603 - 29678678
Alignment:
Q  235 ggatatggataggatacagatttcatatttatccaacggagcggacacatatatcacactatctgcatccatggat 310  Q
    ||||||||||||| ||  |||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||    
T  29678603 ggatatggatagggtatggatttcatatttatccaacggagcggacacatatatcatactatctgcatcaatggat 29678678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 234 - 310
Target Start/End: Original strand, 25294208 - 25294284
Alignment:
Q  234 tggatatggataggatacagatttcatatttatccaacggagcggacacatatatcacactatctgcatccatggat 310  Q
    |||||||||||||| ||||||||||||||||||| ||||||| ||||||  ||||||||||||| ||||||||||||    
T  25294208 tggatatggatagggtacagatttcatatttatctaacggagtggacacggatatcacactatccgcatccatggat 25294284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 235 - 310
Target Start/End: Complemental strand, 47140631 - 47140556
Alignment:
Q  235 ggatatggataggatacagatttcatatttatccaacggagcggacacatatatcacactatctgcatccatggat 310  Q
    |||||| |||| ||||  ||||||||||||||||||||||||||||||  ||||||||||||| ||||||||||||    
T  47140631 ggatatagataagatatggatttcatatttatccaacggagcggacacgaatatcacactatccgcatccatggat 47140556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 34 - 162
Target Start/End: Original strand, 24006169 - 24006296
Alignment:
Q  34 gagggacccagaatccatgtaagcttttgtcttattctgtgagctatctctatcatagtatctgatagagaagtgattttgtcttcttctgtctacatgt 133  Q
    |||||||||||||||||| || | ||||  ||| || ||||| | || |||||||||||||||||||||| ||| ||||||||||||| ||||||| |||    
T  24006169 gagggacccagaatccatataggtttttc-cttcttatgtgaaccatatctatcatagtatctgatagagcagttattttgtcttcttatgtctacgtgt 24006267  T
Q  134 gcaaccagacagaggacatcaagaacaaa 162  Q
      ||  ||||| ||||| |||||||||||    
T  24006268 cgaaaaagacaaaggacctcaagaacaaa 24006296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 235 - 310
Target Start/End: Original strand, 48379375 - 48379450
Alignment:
Q  235 ggatatggataggatacagatttcatatttatccaacggagcggacacatatatcacactatctgcatccatggat 310  Q
    ||||||||||| | ||| ||||||||||||||| ||||||||||||||  || |||||||||| ||||||||||||    
T  48379375 ggatatggatatggtacggatttcatatttatctaacggagcggacacggatttcacactatccgcatccatggat 48379450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 235 - 297
Target Start/End: Complemental strand, 25987233 - 25987171
Alignment:
Q  235 ggatatggataggatacagatttcatatttatccaacggagcggacacatatatcacactatc 297  Q
    ||||||||||| |||||| |||||||| ||||| |||||||||||||| ||||||||||||||    
T  25987233 ggatatggataagatacatatttcatacttatctaacggagcggacacgtatatcacactatc 25987171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 254 - 307
Target Start/End: Original strand, 19884710 - 19884763
Alignment:
Q  254 atttcatatttatccaacggagcggacacatatatcacactatctgcatccatg 307  Q
    ||||||||||| |||||||||||||||||| ||||||||||||| |||||||||    
T  19884710 atttcatatttgtccaacggagcggacacagatatcacactatccgcatccatg 19884763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 235 - 309
Target Start/End: Original strand, 2192071 - 2192145
Alignment:
Q  235 ggatatggataggatacagatttcatatttatccaacggagcggacacatatatcacactatctgcatccatgga 309  Q
    |||||||||||||| | ||||||||||||| || || |||||||||||  |||||||| |||| |||||||||||    
T  2192071 ggatatggataggacatagatttcatatttgtctaatggagcggacacggatatcacattatccgcatccatgga 2192145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 236 - 310
Target Start/End: Original strand, 31585516 - 31585590
Alignment:
Q  236 gatatggataggatacagatttcatatttatccaacggagcggacacatatatcacactatctgcatccatggat 310  Q
    |||||||||||| ||| ||||| ||||||||| |||||||||||||   |||| |||||||| ||||||||||||    
T  31585516 gatatggatagggtacggattttatatttatctaacggagcggacaaggatattacactatccgcatccatggat 31585590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 235 - 303
Target Start/End: Original strand, 36729036 - 36729104
Alignment:
Q  235 ggatatggataggatacagatttcatatttatccaacggagcggacacatatatcacactatctgcatc 303  Q
    |||||| |||||| |||  ||||||||||||||||||||| |||||||  ||||||||||||| |||||    
T  36729036 ggatattgatagggtacgaatttcatatttatccaacggatcggacacggatatcacactatccgcatc 36729104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 235 - 307
Target Start/End: Original strand, 38264606 - 38264678
Alignment:
Q  235 ggatatggataggatacagatttcatatttatccaacggagcggacacatatatcacactatctgcatccatg 307  Q
    |||||||||||||  || |||||||||||| || |||||| ||||||||||||||||| |||| | |||||||    
T  38264606 ggatatggatagggcacggatttcatatttgtctaacggaacggacacatatatcacagtatccgtatccatg 38264678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 236 - 310
Target Start/End: Original strand, 17563069 - 17563143
Alignment:
Q  236 gatatggataggatacagatttcatatttatccaacggagcggacacatatatcacactatctgcatccatggat 310  Q
    |||||||||||| ||  ||||| ||||||||| ||| ||||||||| | |||| |||||||| ||||||||||||    
T  17563069 gatatggatagggtatggattttatatttatctaacagagcggacaaagatattacactatccgcatccatggat 17563143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 236 - 306
Target Start/End: Original strand, 31293040 - 31293110
Alignment:
Q  236 gatatggataggatacagatttcatatttatccaacggagcggacacatatatcacactatctgcatccat 306  Q
    |||||||||||| | | ||||||||||||||| ||||||||||| | | |||||||| |||| ||||||||    
T  31293040 gatatggataggctgcggatttcatatttatctaacggagcggatataaatatcacattatccgcatccat 31293110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 236 - 303
Target Start/End: Complemental strand, 11894144 - 11894077
Alignment:
Q  236 gatatggataggatacagatttcatatttatccaacggagcggacacatatatcacactatctgcatc 303  Q
    |||||| ||| | |||||||||||||||||||||| ||| | |||||| |||| |||||||| |||||    
T  11894144 gatatgaatatggtacagatttcatatttatccaatggaacagacacaaatattacactatccgcatc 11894077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 159
Target Start/End: Original strand, 19223669 - 19223792
Alignment:
Q  34 gagggacccagaatccatgtaagcttttgtcttattctgtgagctatctctatcatagtatctgatagagaagtgattttgtcttcttctgtctacatgt 133  Q
    |||||||| |||||||| ||||||||  ||||||||||||||| | | || ||||  | ||||||||||| | |  ||||||||||||| |||||| |||    
T  19223669 gagggacctagaatccacgtaagctt--gtcttattctgtgagttttgtcaatcagtgcatctgatagagcaattcttttgtcttcttccgtctacgtgt 19223766  T
Q  134 gcaaccagacagaggacatcaagaac 159  Q
     | ||  |||| ||||||||| ||||    
T  19223767 acgacaggacaaaggacatcaggaac 19223792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 81; Significance: 4e-38; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 2818 - 2654
Alignment:
Q  1 tcagacacaaaatctgacttgc-tacttggatcagagggacccagaatccatgtaagcttttgtcttattctgtgagctatctctatcatagtatctgat 99  Q
    ||||||| | |||||||||||| |||||||||  |||||||||| ||| ||  |||||||||||||||| ||||||| | ||||||||||||||||||||    
T  2818 tcagacatagaatctgacttgcatacttggatatgagggacccataattcacataagcttttgtcttatactgtgagttgtctctatcatagtatctgat 2719  T
Q  100 agagaagtgattttgtcttcttctgtctacatgtgcaaccagacagaggacatcaagaacaaaga 164  Q
    |||| |||  |||||||||||||||||||  |||||||| ||| | |||||||||||||||||||    
T  2718 agagtagttcttttgtcttcttctgtctatgtgtgcaacaagaaaaaggacatcaagaacaaaga 2654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 77; Significance: 1e-35; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 38 - 166
Target Start/End: Original strand, 22316639 - 22316767
Alignment:
Q  38 gacccagaatccatgtaagcttttgtcttattctgtgagctatctctatcatagtatctgatagagaagtgattttgtcttcttctgtctacatgtgcaa 137  Q
    ||||||||||||| ||||||||||||||||||||||||| | |||||||||||||| ||||||||| |||  |||||||||||||| | ||| |||||||    
T  22316639 gacccagaatccacgtaagcttttgtcttattctgtgagttgtctctatcatagtaactgatagagcagttcttttgtcttcttctatgtacgtgtgcaa 22316738  T
Q  138 ccagacagaggacatcaagaacaaagaga 166  Q
    ||||||| | ||| |||||||||||||||    
T  22316739 ccagacaaaagacctcaagaacaaagaga 22316767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 7 - 166
Target Start/End: Original strand, 5842711 - 5842871
Alignment:
Q  7 acaaaatctgacttgc-tacttggatcagagggacccagaatccatgtaagcttttgtcttattctgtgagctatctctatcatagtatctgatagagaa 105  Q
    ||||||||||||| || |||||| ||| || |||||||||||| |  ||| ||||| ||||||| |||||| | |||||||||||||||||||||||| |    
T  5842711 acaaaatctgactggcatacttgaatctgaaggacccagaatctacataatcttttatcttattatgtgagttgtctctatcatagtatctgatagagca 5842810  T
Q  106 gtgattttgtcttcttctgtctacatgtgcaaccagacagaggacatcaagaacaaagaga 166  Q
    ||  |||||||||||| ||||||| |||||||||| | | ||||||| |||||||||||||    
T  5842811 gttcttttgtcttcttatgtctacgtgtgcaaccaaataaaggacattaagaacaaagaga 5842871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 233 - 310
Target Start/End: Complemental strand, 51357027 - 51356950
Alignment:
Q  233 gtggatatggataggatacagatttcatatttatccaacggagcggacacatatatcacactatctgcatccatggat 310  Q
    |||||||||||||||  ||| ||||||||||| |||||||||||||||||| ||||||||||||| ||||||||||||    
T  51357027 gtggatatggatagggcacaaatttcatatttgtccaacggagcggacacagatatcacactatccgcatccatggat 51356950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 254 - 310
Target Start/End: Complemental strand, 23626679 - 23626623
Alignment:
Q  254 atttcatatttatccaacggagcggacacatatatcacactatctgcatccatggat 310  Q
    ||||||||||||||| |||||||||||||| |||||||||||| |||||||||||||    
T  23626679 atttcatatttatccgacggagcggacacaaatatcacactatttgcatccatggat 23626623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 235 - 310
Target Start/End: Complemental strand, 41039176 - 41039101
Alignment:
Q  235 ggatatggataggatacagatttcatatttatccaacggagcggacacatatatcacactatctgcatccatggat 310  Q
    ||||||||||| | ||| ||||||||||||||| ||||||||||||||  |||||||| |||| ||||||||||||    
T  41039176 ggatatggatatggtacggatttcatatttatctaacggagcggacacggatatcacattatccgcatccatggat 41039101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 236 - 307
Target Start/End: Complemental strand, 19841584 - 19841513
Alignment:
Q  236 gatatggataggatacagatttcatatttatccaacggagcggacacatatatcacactatctgcatccatg 307  Q
    ||||| |||||| ||| |||||||||||||||| || ||||||||| | ||||||||||||| |||||||||    
T  19841584 gatatcgatagggtacggatttcatatttatccgacagagcggacatagatatcacactatccgcatccatg 19841513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 236 - 310
Target Start/End: Complemental strand, 22278152 - 22278078
Alignment:
Q  236 gatatggataggatacagatttcatatttatccaacggagcggacacatatatcacactatctgcatccatggat 310  Q
    ||||| |||||| ||| |||||||||||||||||||||| |||||||  |||||| | ||||| |||||||||||    
T  22278152 gatattgatagggtacggatttcatatttatccaacggaacggacacggatatcataatatctacatccatggat 22278078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 235 - 304
Target Start/End: Original strand, 36465098 - 36465167
Alignment:
Q  235 ggatatggataggatacagatttcatatttatccaacggagcggacacatatatcacactatctgcatcc 304  Q
    |||||||||||| | |  |||||||||||| |||||||||||||| ||| ||||||||||||| ||||||    
T  36465098 ggatatggatagaacattgatttcatatttgtccaacggagcggatacaaatatcacactatccgcatcc 36465167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 235 - 310
Target Start/End: Original strand, 8819586 - 8819661
Alignment:
Q  235 ggatatggataggatacagatttcatatttatccaacggagcggacacatatatcacactatctgcatccatggat 310  Q
    |||||||||||||  ||  ||||||||||| |||||||||| |||| |  ||||||||||||| ||||||||||||    
T  8819586 ggatatggatagggaacgaatttcatatttgtccaacggagtggacgcgaatatcacactatccgcatccatggat 8819661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 236 - 310
Target Start/End: Complemental strand, 42555171 - 42555099
Alignment:
Q  236 gatatggataggatacagatttcatatttatccaacggagcggacacatatatcacactatctgcatccatggat 310  Q
    |||||||||||  |||| |||||||||||||| ||||||||||  | ||| ||||||||||| ||||||||||||    
T  42555171 gatatggatagagtacaaatttcatatttatcaaacggagcgg--atatacatcacactatccgcatccatggat 42555099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 34 - 144
Target Start/End: Original strand, 16322148 - 16322257
Alignment:
Q  34 gagggacccagaatccatgtaagcttttgtcttattctgtgagctatctctatcatagtatctgatagagaagtgattttgtcttcttctgtctacatgt 133  Q
    ||||||||||||||||| ||| ||||| |||||||||| ||| || || ||||||||||| || ||| || |||  |||||| ||||| || |||| |||    
T  16322148 gagggacccagaatccacgtaggcttt-gtcttattctatgaactgtccctatcatagtacctaatatagcagttcttttgttttcttttgcctacgtgt 16322246  T
Q  134 gcaaccagaca 144  Q
    |||| ||||||    
T  16322247 gcaaacagaca 16322257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 257 - 310
Target Start/End: Complemental strand, 24912987 - 24912934
Alignment:
Q  257 tcatatttatccaacggagcggacacatatatcacactatctgcatccatggat 310  Q
    |||||||||||||||| || |||||||||||||| ||||| ||| |||||||||    
T  24912987 tcatatttatccaacgaagtggacacatatatcatactatatgcgtccatggat 24912934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 257 - 310
Target Start/End: Complemental strand, 24916671 - 24916618
Alignment:
Q  257 tcatatttatccaacggagcggacacatatatcacactatctgcatccatggat 310  Q
    |||||||||||||||| |||||||||  |||||| ||||||||| |||||||||    
T  24916671 tcatatttatccaacgaagcggacacggatatcatactatctgcgtccatggat 24916618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 310
Target Start/End: Original strand, 40572178 - 40572252
Alignment:
Q  234 tggatatggataggatacagatttcatatttatccaacggagcggacacatatatcacactatctgcatccatggat 310  Q
    |||||||||||||| || |  ||||| ||||||| ||||||| ||||||  |||||||||||||  |||||||||||    
T  40572178 tggatatggatagggtaaa--tttcacatttatctaacggagtggacacgaatatcacactatccacatccatggat 40572252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 232 - 292
Target Start/End: Original strand, 17120565 - 17120625
Alignment:
Q  232 cgtggatatggataggatacagatttcatatttatccaacggagcggacacatatatcaca 292  Q
    |||||||||| ||| | |||| ||||||||||| ||||| ||| | |||||||||||||||    
T  17120565 cgtggatatgaatatggtacaaatttcatatttgtccaatggaacagacacatatatcaca 17120625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 254 - 310
Target Start/End: Complemental strand, 38951445 - 38951389
Alignment:
Q  254 atttcatatttatccaacggagcggacacatatatcacactatctgcatccatggat 310  Q
    |||| ||||||||| |||||| |||||||  |||||||||| || ||||||||||||    
T  38951445 attttatatttatctaacggaacggacacgaatatcacactctccgcatccatggat 38951389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 254 - 310
Target Start/End: Original strand, 40715150 - 40715206
Alignment:
Q  254 atttcatatttatccaacggagcggacacatatatcacactatctgcatccatggat 310  Q
    |||||||| |||| ||||||| | |||||  |||||||||||||||||||| |||||    
T  40715150 atttcatacttattcaacggatcagacacgaatatcacactatctgcatccttggat 40715206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 73; Significance: 2e-33; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 5 - 196
Target Start/End: Original strand, 23432822 - 23433017
Alignment:
Q  5 acacaaaatctgacttgc-tacttggatcagagggacccagaatccatgtaagcttttgtcttattctgtgagctatctctatcatagtatctgatagag 103  Q
    ||||| ||||||||| || |||||||||| ||||||||  ||||| | ||||||||||||||||||||||||| |  |||||||||||||||||||||||    
T  23432822 acacagaatctgactggcatacttggatctgagggaccaggaatctacgtaagcttttgtcttattctgtgagttgcctctatcatagtatctgatagag 23432921  T
Q  104 aag-tgattttgtcttcttctgtctacatgtgcaaccagacagaggacatcaagaacaaagaga--gaaacacatcattcttattttagcaaagga 196  Q
     || |  ||||||||| ||||||||||||||| ||  ||||| ||||| |||||||||||||||  | |||| ||  ||||| |||||||||||||    
T  23432922 cagttttttttgtctttttctgtctacatgtgaaaatagacaaaggacctcaagaacaaagagaatgcaacagatagttcttcttttagcaaagga 23433017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 21 - 166
Target Start/End: Complemental strand, 5826501 - 5826356
Alignment:
Q  21 gctacttggatcagagggacccagaatccatgtaagcttttgtcttattctgtgagctatctctatcatagtatctgatagagaagtgattttgtcttct 120  Q
    |||||||||||| ||| ||| |||||| || ||||| |||||||||||| |||||| | |  |||||||| |||||||||||| | || ||||||||| |    
T  5826501 gctacttggatctgagagactcagaattcacgtaagattttgtcttattatgtgagttgttactatcataatatctgatagagcaatgcttttgtctttt 5826402  T
Q  121 tctgtctacatgtgcaaccagacagaggacatcaagaacaaagaga 166  Q
    ||| ||||| |||||||||||||| |||||||||||||| ||||||    
T  5826401 tctatctacgtgtgcaaccagacaaaggacatcaagaacgaagaga 5826356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 235 - 310
Target Start/End: Original strand, 7987511 - 7987586
Alignment:
Q  235 ggatatggataggatacagatttcatatttatccaacggagcggacacatatatcacactatctgcatccatggat 310  Q
    ||||||||||||| ||| ||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||    
T  7987511 ggatatggatagggtacggatttcatatttatccaacggagcggacacagatatcacaatatctgcatccatggat 7987586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 5829126 - 5828955
Alignment:
Q  1 tcagacacaaaatctgacttgctacttggatcagagggacccagaatccatgtaagcttttgtcttattctgtgagctatct------ctatcatagtat 94  Q
    ||||||||| ||| || || |||||||||||| ||| ||| |||||| || |||||||||||||||||| |||||| | |        |||||||| |||    
T  5829126 tcagacacagaatttggctagctacttggatctgagagactcagaattcacgtaagcttttgtcttattatgtgagttgtagttgttgctatcataatat 5829027  T
Q  95 ctgatagagaagtgattttgtcttcttctgtctacatgtgcaaccagacagaggacatcaagaacaaagaga 166  Q
    ||||||||| | || ||||||||| |||| ||||| |||||||||||||| |||||||||||||| ||||||    
T  5829026 ctgatagagcaatgcttttgtctttttctatctacgtgtgcaaccagacaaaggacatcaagaacgaagaga 5828955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 235 - 306
Target Start/End: Original strand, 7968719 - 7968790
Alignment:
Q  235 ggatatggataggatacagatttcatatttatccaacggagcggacacatatatcacactatctgcatccat 306  Q
    ||||||||||||| ||| ||||||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  7968719 ggatatggatagggtacggatttcatatttatccaacggagcggacacggatatcacactatctgcatccat 7968790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 23 - 121
Target Start/End: Complemental strand, 18566003 - 18565905
Alignment:
Q  23 tacttggatcagagggacccagaatccatgtaagcttttgtcttattctgtgagctatctctatcatagtatctgatagagaagtgattttgtcttctt 121  Q
    |||||||||| ||||||||||||||||| |||  ||||||||||||| ||||||   ||||||||||| ||||||||| ||||||  ||||||||||||    
T  18566003 tacttggatctgagggacccagaatccacgtagacttttgtcttattttgtgagaggtctctatcatattatctgataaagaagttcttttgtcttctt 18565905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 237 - 310
Target Start/End: Complemental strand, 31005857 - 31005784
Alignment:
Q  237 atatggataggatacagatttcatatttatccaacggagcggacacatatatcacactatctgcatccatggat 310  Q
    |||||||||||  || |||||||||||| |||||||||||||||||  ||||||||||||||||||||||||||    
T  31005857 atatggatagggcacggatttcatatttgtccaacggagcggacacggatatcacactatctgcatccatggat 31005784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 234 - 310
Target Start/End: Original strand, 8227512 - 8227588
Alignment:
Q  234 tggatatggataggatacagatttcatatttatccaacggagcggacacatatatcacactatctgcatccatggat 310  Q
    |||||||||||||  ||| ||||||||||||||| ||||||||||||||  |||||||||||||  |||||||||||    
T  8227512 tggatatggatagagtacggatttcatatttatctaacggagcggacacggatatcacactatccacatccatggat 8227588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 34 - 162
Target Start/End: Complemental strand, 13645450 - 13645324
Alignment:
Q  34 gagggacccagaatccatgtaagcttttgtcttattctgtgagctatctctatcatagtatctgatagagaagtgattttgtcttcttctgtctacatgt 133  Q
    ||||| ||||||||||| ||| | ||| ||||| ||||||||  | || ||||||||||||||||||||| |||  ||||||||||||||||| || |||    
T  13645450 gagggtcccagaatccacgtaggattt-gtcttcttctgtgaattctccctatcatagtatctgatagagtagtt-ttttgtcttcttctgtccacgtgt 13645353  T
Q  134 gcaaccagacagaggacatcaagaacaaa 162  Q
    |||| |||||| || || |||||||||||    
T  13645352 gcaaacagacaaagaacctcaagaacaaa 13645324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 34 - 162
Target Start/End: Complemental strand, 13745875 - 13745749
Alignment:
Q  34 gagggacccagaatccatgtaagcttttgtcttattctgtgagctatctctatcatagtatctgatagagaagtgattttgtcttcttctgtctacatgt 133  Q
    ||||| ||||||||||| ||| | ||| ||||| ||||||||  | || ||||||||||||||||||||| |||  ||||||||||||||||| || |||    
T  13745875 gagggtcccagaatccacgtaggattt-gtcttcttctgtgaattctccctatcatagtatctgatagagtagtt-ttttgtcttcttctgtccacgtgt 13745778  T
Q  134 gcaaccagacagaggacatcaagaacaaa 162  Q
    |||| |||||| || || |||||||||||    
T  13745777 gcaaacagacaaagaacctcaagaacaaa 13745749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 235 - 310
Target Start/End: Complemental strand, 11481276 - 11481201
Alignment:
Q  235 ggatatggataggatacagatttcatatttatccaacggagcggacacatatatcacactatctgcatccatggat 310  Q
    |||||||||||||||||  |||||||||||||| |  |||||||||||| ||||||||||||| ||||| ||||||    
T  11481276 ggatatggataggatacgaatttcatatttatctattggagcggacacaaatatcacactatccgcatctatggat 11481201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 235 - 294
Target Start/End: Original strand, 9765287 - 9765346
Alignment:
Q  235 ggatatggataggatacagatttcatatttatccaacggagcggacacatatatcacact 294  Q
    ||||||||||||| ||| ||||| ||||||||| |||| |||||||||||||||||||||    
T  9765287 ggatatggatagggtacggatttaatatttatctaacgaagcggacacatatatcacact 9765346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 235 - 310
Target Start/End: Original strand, 36583174 - 36583249
Alignment:
Q  235 ggatatggataggatacagatttcatatttatccaacggagcggacacatatatcacactatctgcatccatggat 310  Q
    ||||||| ||||| ||| ||||||||||||||| |||||| |||||||  |||||| |||||  ||||||||||||    
T  36583174 ggatatgaatagggtacggatttcatatttatctaacggaacggacacggatatcatactatacgcatccatggat 36583249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 67; Significance: 9e-30; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 11 - 164
Target Start/End: Original strand, 21216327 - 21216481
Alignment:
Q  11 aatctgacttgc-tacttggatcagagggacccagaatccatgtaagcttttgtcttattctgtgagctatctctatcatagtatctgatagagaagtga 109  Q
    |||||||||||| |||||||||| |||||||||| |||| | |||||| ||||||||||| | | || | | ||| |||||||||||||||||  ||| |    
T  21216327 aatctgacttgcatacttggatccgagggacccaaaatcaacgtaagcctttgtcttattttataagttgtatctgtcatagtatctgatagatcagtta 21216426  T
Q  110 ttttgtcttcttctgtctacatgtgcaaccagacagaggacatcaagaacaaaga 164  Q
    |||||||||||||||||||  ||||||| |||||| ||||| |||||||||||||    
T  21216427 ttttgtcttcttctgtctatgtgtgcaaacagacaaaggacctcaagaacaaaga 21216481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 235 - 310
Target Start/End: Original strand, 35188881 - 35188956
Alignment:
Q  235 ggatatggataggatacagatttcatatttatccaacggagcggacacatatatcacactatctgcatccatggat 310  Q
    |||||| |||||||||||||||||||||||||| ||||||||||||||  ||||||||||||| ||||||||||||    
T  35188881 ggatatagataggatacagatttcatatttatctaacggagcggacacgaatatcacactatccgcatccatggat 35188956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 235 - 310
Target Start/End: Complemental strand, 42836825 - 42836750
Alignment:
Q  235 ggatatggataggatacagatttcatatttatccaacggagcggacacatatatcacactatctgcatccatggat 310  Q
    ||||||||||| | |||| |||||||||||||| ||||||||||||||| ||||||||||||| ||||||||||||    
T  42836825 ggatatggatatggtacatatttcatatttatctaacggagcggacacagatatcacactatccgcatccatggat 42836750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 235 - 310
Target Start/End: Complemental strand, 3926054 - 3925979
Alignment:
Q  235 ggatatggataggatacagatttcatatttatccaacggagcggacacatatatcacactatctgcatccatggat 310  Q
    ||||||||||| | ||| ||||||||||||||| ||||||||||||||| |||||||||||||  |||||||||||    
T  3926054 ggatatggatatggtacggatttcatatttatctaacggagcggacacaaatatcacactatccacatccatggat 3925979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 3 - 152
Target Start/End: Original strand, 24885122 - 24885271
Alignment:
Q  3 agacacaaaatctgacttgctacttggatcagagggacccagaatccatgtaagcttttgtcttattctgtgagctatctctatcatagtatctgataga 102  Q
    ||||||| ||||||||  |||||||| |||  ||||||| ||||||||  ||||||||||||||||| |||||| | | |||||||||| ||||  ||||    
T  24885122 agacacagaatctgacaggctacttgaatctaagggacctagaatccacataagcttttgtcttattatgtgagttttttctatcatagcatctagtaga 24885221  T
Q  103 gaagtgattttgtcttcttctgtctacatgtgcaaccagacagaggacat 152  Q
    | |||  |||||||||||| ||| ||  ||| ||||| |||| |||||||    
T  24885222 gcagttcttttgtcttcttttgtttatgtgtacaaccggacaaaggacat 24885271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 234 - 310
Target Start/End: Original strand, 39800688 - 39800764
Alignment:
Q  234 tggatatggataggatacagatttcatatttatccaacggagcggacacatatatcacactatctgcatccatggat 310  Q
    |||||||||||||| ||| ||||| ||||||||| ||||||| ||||||  ||||||||||||| ||||||||||||    
T  39800688 tggatatggatagggtacggattttatatttatctaacggagtggacacggatatcacactatccgcatccatggat 39800764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 235 - 310
Target Start/End: Original strand, 39207383 - 39207458
Alignment:
Q  235 ggatatggataggatacagatttcatatttatccaacggagcggacacatatatcacactatctgcatccatggat 310  Q
    ||||||||| ||| ||| ||||||||||||||| |||||||| |||||  ||||||||||||| ||||||||||||    
T  39207383 ggatatggaaagggtacggatttcatatttatctaacggagcagacacggatatcacactatccgcatccatggat 39207458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 234 - 310
Target Start/End: Complemental strand, 40056827 - 40056751
Alignment:
Q  234 tggatatggataggatacagatttcatatttatccaacggagcggacacatatatcacactatctgcatccatggat 310  Q
    |||||||||||||| |||  |||||||||||||| ||||||| ||| ||  ||||||||||||| ||||||||||||    
T  40056827 tggatatggatagggtacgaatttcatatttatctaacggagtggaaacggatatcacactatccgcatccatggat 40056751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 32 - 155
Target Start/End: Complemental strand, 9824430 - 9824308
Alignment:
Q  32 cagagggacccagaatccatgtaagcttttgtcttattctgtgagctatctctatcatagtatctgatagagaagtgattttgtcttcttctgtctacat 131  Q
    ||||||||||||||||||||||| || ||  ||||||| |||||  | || ||||| ||||||||||||||| |||  |||||||||| ||| ||||| |    
T  9824430 cagagggacccagaatccatgtaggcctta-tcttattatgtgaattgtccctatcttagtatctgatagagcagttcttttgtcttcctctctctacgt 9824332  T
Q  132 gtgcaaccagacagaggacatcaa 155  Q
     ||||| |||||| ||||| ||||    
T  9824331 atgcaaacagacaaaggacctcaa 9824308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 235 - 307
Target Start/End: Complemental strand, 23429077 - 23429005
Alignment:
Q  235 ggatatggataggatacagatttcatatttatccaacggagcggacacatatatcacactatctgcatccatg 307  Q
    ||||||||||||| ||| ||||||||||||||| | |||||| ||||   ||||||||||||| |||||||||    
T  23429077 ggatatggatagggtacggatttcatatttatctatcggagcagacaaggatatcacactatccgcatccatg 23429005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 34 - 121
Target Start/End: Original strand, 21391183 - 21391270
Alignment:
Q  34 gagggacccagaatccatgtaagcttttgtcttattctgtgagctatctctatcatagtatctgatagagaagtgattttgtcttctt 121  Q
    |||||||||  ||||||||||| |||||||||||||||||||| | |||||||||    ||||| ||||| | | |||||||||||||    
T  21391183 gagggacccgtaatccatgtaaacttttgtcttattctgtgagttgtctctatcactaaatctggtagagcaattattttgtcttctt 21391270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 23 - 166
Target Start/End: Complemental strand, 129211 - 129068
Alignment:
Q  23 tacttggatcagagggacccagaatccatgtaagcttttgtcttattctgtgagctatctctatcatagtatctgatagagaagtgattttgtcttcttc 122  Q
    |||||||||| |||||||||  ||| || ||||  |||||||| || ||||||||| ||| || | |||||| |||||||| |||  |||||||||||||    
T  129211 tacttggatctgagggacccgaaatgcacgtaaatttttgtctaatactgtgagctgtctataccgtagtatttgatagaggagttcttttgtcttcttc 129112  T
Q  123 tgtctacatgtgcaaccagacagaggacatcaagaacaaagaga 166  Q
    ||||||| |||||||| ||||| | ||| |||||||||||||||    
T  129111 tgtctacgtgtgcaactagacaaatgacctcaagaacaaagaga 129068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0691 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0691
Description:

Target: scaffold0691; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 234 - 310
Target Start/End: Complemental strand, 7761 - 7685
Alignment:
Q  234 tggatatggataggatacagatttcatatttatccaacggagcggacacatatatcacactatctgcatccatggat 310  Q
    |||||||||||||| ||| ||||||||||||||| ||||||| ||||||  ||||||||||||| ||||||||||||    
T  7761 tggatatggatagggtacggatttcatatttatctaacggagtggacacggatatcacactatccgcatccatggat 7685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0300 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: scaffold0300
Description:

Target: scaffold0300; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 21 - 133
Target Start/End: Complemental strand, 7566 - 7454
Alignment:
Q  21 gctacttggatcagagggacccagaatccatgtaagcttttgtcttattctgtgagctatctctatcatagtatctgatagagaagtgattttgtcttct 120  Q
    ||||| |||||| |||||||| |||||||| ||||| ||||||||||||||||||| | ||||||||| |  ||| | ||||| ||| |||||||||| |    
T  7566 gctacatggatctgagggacctagaatccacgtaagtttttgtcttattctgtgagttgtctctatcagaccatccggtagagcagttattttgtctttt 7467  T
Q  121 tctgtctacatgt 133  Q
    || ||||||||||    
T  7466 tccgtctacatgt 7454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0300; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 27 - 73
Target Start/End: Complemental strand, 12278 - 12232
Alignment:
Q  27 tggatcagagggacccagaatccatgtaagcttttgtcttattctgt 73  Q
    |||||| |||||||||| |||||| ||||||||||||||||||||||    
T  12278 tggatctgagggacccaaaatccacgtaagcttttgtcttattctgt 12232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0115 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 234 - 310
Target Start/End: Complemental strand, 21908 - 21832
Alignment:
Q  234 tggatatggataggatacagatttcatatttatccaacggagcggacacatatatcacactatctgcatccatggat 310  Q
    |||||||||||||| ||| ||||||||||||||| ||||||| ||||||  ||||||||||||| ||||||||||||    
T  21908 tggatatggatagggtacggatttcatatttatctaacggagtggacacggatatcacactatccgcatccatggat 21832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 59 - 162
Target Start/End: Complemental strand, 26618 - 26515
Alignment:
Q  59 tttgtcttattctgtgagctatctctatcatagtatctgatagagaagtgattttgtcttcttctgtctacatgtgcaaccagacagaggacatcaagaa 158  Q
    |||||||||||||||||  |||| ||||| |||||| | |||||| ||| ||||||||||||||| ||||| ||||||| |||||| || || |||||||    
T  26618 tttgtcttattctgtgaattatccctatcgtagtatgttatagagcagttattttgtcttcttctatctacgtgtgcaaacagacaaagtacctcaagaa 26519  T
Q  159 caaa 162  Q
    ||||    
T  26518 caaa 26515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0711 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0711
Description:

Target: scaffold0711; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 59 - 166
Target Start/End: Original strand, 1568 - 1677
Alignment:
Q  59 tttgtcttattctgtgagctatctctat--catagtatctgatagagaagtgattttgtcttcttctgtctacatgtgcaaccagacagaggacatcaag 156  Q
    ||||||||||| ||||| ||||| ||||  ||||||||||||||||| |||   ||||||||||| ||||||| ||||||| || ||| || || |||||    
T  1568 tttgtcttattatgtgaactatccctatatcatagtatctgatagagtagtttgtttgtcttcttttgtctacgtgtgcaaacaaacaaagaacctcaag 1667  T
Q  157 aacaaagaga 166  Q
    ||||||||||    
T  1668 aacaaagaga 1677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 236 - 309
Target Start/End: Complemental strand, 66439 - 66366
Alignment:
Q  236 gatatggataggatacagatttcatatttatccaacggagcggacacatatatcacactatctgcatccatgga 309  Q
    ||||||||||||   |||||||||||||| ||||| ||||| |||||| ||||||||||||| |||||||||||    
T  66439 gatatggatagggctcagatttcatatttgtccaatggagctgacacaaatatcacactatccgcatccatgga 66366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 234 - 310
Target Start/End: Original strand, 7161 - 7236
Alignment:
Q  234 tggatatggataggatacagatttcatatttatccaacggagcggacacatatatcacactatctgcatccatggat 310  Q
    ||||||| |||||| |||  |||||||||||||| |||| |||||| ||| ||||||||||||||||||||||||||    
T  7161 tggatatagatagggtacgaatttcatatttatctaacg-agcggatacagatatcacactatctgcatccatggat 7236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0527 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: scaffold0527
Description:

Target: scaffold0527; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 34 - 129
Target Start/End: Original strand, 397 - 492
Alignment:
Q  34 gagggacccagaatccatgtaagcttttgtcttattctgtgagctatctctatcatagtatctgatagagaagtgattttgtcttcttctgtctac 129  Q
    |||||||| |||||||| ||||  |||||||||||||||| |||| ||||||| |  | |||||  |||| ||  |||||||||||||||||||||    
T  397 gagggacctagaatccacgtaacattttgtcttattctgtaagctgtctctataactgcatctggcagagcagctattttgtcttcttctgtctac 492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0527; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 34 - 129
Target Start/End: Original strand, 8460 - 8555
Alignment:
Q  34 gagggacccagaatccatgtaagcttttgtcttattctgtgagctatctctatcatagtatctgatagagaagtgattttgtcttcttctgtctac 129  Q
    |||||||| |||||||| ||||  |||||||||||||||| |||| ||||||| |  | |||||  |||| ||  |||||||||||||||||||||    
T  8460 gagggacctagaatccacgtaacattttgtcttattctgtaagctgtctctataactgcatctggcagagcagctattttgtcttcttctgtctac 8555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 35 - 129
Target Start/End: Complemental strand, 79509 - 79415
Alignment:
Q  35 agggacccagaatccatgtaagcttttgtcttattctgtgagctatctctatcatagtatctgatagagaagtgattttgtcttcttctgtctac 129  Q
    ||||||| |||||||| |||||||||| ||||||| ||| |  | |||||||||| | ||||| ||||  |   |||||||||||||||||||||    
T  79509 agggacctagaatccacgtaagcttttctcttattatgttaattgtctctatcattgcatctggtagaacaactattttgtcttcttctgtctac 79415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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