View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10954A_low_154 (Length: 328)
Name: NF10954A_low_154
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_154 |
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Alignment Details
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 10 - 301
Target Start/End: Original strand, 31894176 - 31894466
Alignment:
| Q |
10 |
aaatgaagacaatgatagtcattatgaatgtaatgatagactgtgagtaaatagtacttgaaattgtaacagtcaatttagtctctcaaatttaagaaat |
109 |
Q |
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| T |
31894176 |
aaatgaagacaatgatagtcattatgaatgtaatgatagactgtgagtaaatagtacttgaaattgtaagagtcaatttagtctctcaaatttaagaaat |
31894275 |
T |
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| Q |
110 |
aacaatttaatcccctaaattgaaccatgtcagataatttaatacttttttcaaatttaacaccataattttaaaggttattgggttaatatgcagtgga |
209 |
Q |
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| T |
31894276 |
aacactttaatctcttaaattgaataatgtcagataacttcatacttttttcaaatttcaca-cataattataaagattattgggttaatatgcggtgga |
31894374 |
T |
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| Q |
210 |
caactcatttgtatggttgcttttcgccaaatgtggatgattttctggactccctcgtgacacaacaatggtatcaaggttaatggttcaac |
301 |
Q |
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| T |
31894375 |
caactcatttgtatggttgcttttcgccaaatgtggatgattttctggactccctcgtgacacaacaatggtatcaaggtttatggttcaac |
31894466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 10 - 328
Target Start/End: Original strand, 31957023 - 31957344
Alignment:
| Q |
10 |
aaatgaagacaatgatagtcattatga---atgtaatgatagactgtgagtaaatagtacttgaaattgtaacagtcaatttagtctctcaaatttaaga |
106 |
Q |
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| T |
31957023 |
aaatgaagacaatgatagtcattattatggatataatgatagacagtgagtaagtagtacttgaaattgtgagagtcaatt-agtctctcaaatttatga |
31957121 |
T |
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| Q |
107 |
aataacaatttaatcccctaaattgaaccatgtcagataatttaatacttttttcaaatttaacaccataattttaaaggttattgggttaatatgcagt |
206 |
Q |
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| T |
31957122 |
aataacaatttaatctcttaaattgaataatgtcagataacttcatacttttttcaaatttcacaccataattataaagattattgggttaatatgcggt |
31957221 |
T |
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| Q |
207 |
ggacaactcatttgtatggttgcttttcgccaaatgtggatgattttctggact-ccctcgtgacacaacaatggtatcaaggttaatggttcaacgaag |
305 |
Q |
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| T |
31957222 |
gtacaactcatttgtatggctgctcttcgccaaatgtggatgattttctggactcccctcgtgacccaacaatggtatcaaggttgatggttcgacaaag |
31957321 |
T |
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| Q |
306 |
ggttcaaccggctcattgagtcg |
328 |
Q |
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| T |
31957322 |
tgttcatccggctcattgtgtcg |
31957344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 270
Target Start/End: Complemental strand, 41603234 - 41603173
Alignment:
| Q |
209 |
acaactcatttgtatggttgcttttcgccaaatgtggatgattttctggactccctcgtgac |
270 |
Q |
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| T |
41603234 |
acaattcacttgtatggttgctttgggcccaatgtggatgattctctaggctccctcgtgac |
41603173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 125 - 188
Target Start/End: Original strand, 32462564 - 32462627
Alignment:
| Q |
125 |
taaattgaaccatgtcagataatttaatacttttttcaaatttaacaccataattttaaaggtt |
188 |
Q |
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| T |
32462564 |
taaactgaaccatgtcagtcaatttagtcattttttcaaatttaacaccacaattttaaaggtt |
32462627 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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