View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10954A_low_158 (Length: 325)
Name: NF10954A_low_158
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_158 |
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Alignment Details
Target: chr4 (Bit Score: 138; Significance: 4e-72; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 4 - 176
Target Start/End: Original strand, 6261191 - 6261361
Alignment:
| Q |
4 |
ataattgtttttctttatgtaccactttgctatagaaaactgatgaagacataaagaggttctattttttgttgaattacggtaggtggatttgcaaata |
103 |
Q |
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| T |
6261191 |
ataattgtttttctttatgtaccactttgctatagaaaactgatgaagacaaaaag--gttctattttttgttgaattatggtaggtgtatttgcaaata |
6261288 |
T |
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| Q |
104 |
taccactttgctttatattgtttatcagtcacgcatcttagaagagaggtgaggaactttaagtgtaactaag |
176 |
Q |
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| T |
6261289 |
taccactttgctatatattgtttatcagtcacacatcgtagaagagaggtgaggaactttaagtgtaactaag |
6261361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 192 - 319
Target Start/End: Original strand, 6262476 - 6262603
Alignment:
| Q |
192 |
aggtatacataaatttgtcttagttgtgtaaagaagcttgaaaaatcataatcaaaattacagaacaatgcattattttctattcctctcactgaacttt |
291 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6262476 |
aggtatacataaatttgtcttaattgtgtaaagaagcttgaaaaatcataatcaaaattacagaacaatgcattattttctattcctctcactgaacttt |
6262575 |
T |
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| Q |
292 |
tacatagttccttgaaattcttccattt |
319 |
Q |
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| T |
6262576 |
tacatagttccttgaaattcttccattt |
6262603 |
T |
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