View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10954A_low_165 (Length: 321)
Name: NF10954A_low_165
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_165 |
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Alignment Details
Target: chr6 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 312
Target Start/End: Original strand, 2332183 - 2332492
Alignment:
| Q |
1 |
tcatcagaagacgacgaaataaaatttctggtttgaatgtggaaaacatatggtgcacgaatgcaagcactctcaaaagggaagcctcaaagttttttat |
100 |
Q |
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| T |
2332183 |
tcatcagaagacggcgaaataaaatttctggtttgaatgtggaaaacat--ggtgcacgaatgcaagcactctcaaaagggaagcctcaaagttttttat |
2332280 |
T |
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| Q |
101 |
gaatctattccaatcaaatgatccctgtaaacctctcatatagtttacaactggataatattccatctcttagcattaacttgatggaccagcttctctt |
200 |
Q |
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| T |
2332281 |
gcatctatcccaatcaaatgatccctgtaaacctctcatatagtttacaactggataatattccatctcttggcattagcttgatggaccagcttctctt |
2332380 |
T |
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| Q |
201 |
gcctgtaactatggaaaggattaaagattctattttccctatgcactcttacaaagccctaggacatgatggatttcaaccgatattttacaaaatttgt |
300 |
Q |
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| T |
2332381 |
gcctgtcactatggaaaggattaaagattctattttccctatgcactcttacaaagccctaggacatgatggatttcaaccgatattttacaaaatttgt |
2332480 |
T |
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| Q |
301 |
tggcatattgtt |
312 |
Q |
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|||||||||||| |
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| T |
2332481 |
tggcatattgtt |
2332492 |
T |
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Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 223 - 312
Target Start/End: Complemental strand, 1261909 - 1261820
Alignment:
| Q |
223 |
aaagattctattttccctatgcactcttacaaagccctaggacatgatggatttcaaccgatattttacaaaatttgttggcatattgtt |
312 |
Q |
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| T |
1261909 |
aaagatgctattttctcaatgcactcttacaaagccccgggtccagatggttttcaacctatttttttcaaaacttattggcatattgtt |
1261820 |
T |
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