View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10954A_low_167 (Length: 319)

Name: NF10954A_low_167
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10954A_low_167
NF10954A_low_167
[»] chr2 (2 HSPs)
chr2 (15-319)||(1813277-1813581)
chr2 (81-114)||(6626745-6626778)
[»] chr7 (3 HSPs)
chr7 (18-114)||(38622842-38622938)
chr7 (16-51)||(28976333-28976368)
chr7 (72-121)||(28976435-28976484)
[»] chr4 (2 HSPs)
chr4 (18-121)||(33714190-33714293)
chr4 (53-114)||(26275538-26275599)
[»] chr3 (1 HSPs)
chr3 (14-51)||(7877850-7877887)
[»] chr8 (2 HSPs)
chr8 (46-114)||(1310132-1310200)
chr8 (18-51)||(18899949-18899982)
[»] chr6 (1 HSPs)
chr6 (47-114)||(430983-431050)
[»] chr5 (1 HSPs)
chr5 (34-114)||(8928378-8928458)


Alignment Details
Target: chr2 (Bit Score: 297; Significance: 1e-167; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 15 - 319
Target Start/End: Complemental strand, 1813581 - 1813277
Alignment:
Q  15 atggtttgttcaaattccactacacaacagtgctataaccgctacttcacaatgttctgtactaagtagtgtatcatggaacaatagcggtttgttcaaa 114  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1813581 atggtttgttcaaattccgctacacaacagtgctataaccgctacttcacaatgttctgtactaagtagtgtatcatggaacaatagcggtttgttcaaa 1813482  T
Q  115 ctccactgagcaataacactgctagctagtatttggcaacactgagtttgaggggaaaatacctccagctttaacaacatcaacaaggtcatccttcaag 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1813481 ctccactgagcaataacactgctagctagtatttggcaacactgagtttgaggggaaaatacctccagctttaacaacatcaacaaggtcatccttcaag 1813382  T
Q  215 atgacaagaattgaacgagggatcgcaccaacacctagcacctgtgtactctcttggacttttatctcctgataatcatggcacactatagtatctttta 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  1813381 atgacaagaattgaacgagggatcgcaccaacacctagcacctgtgtactctcttggacttttatctcctgataatcatggcacactgtagtatctttta 1813282  T
Q  315 catac 319  Q
    |||||    
T  1813281 catac 1813277  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 114
Target Start/End: Original strand, 6626745 - 6626778
Alignment:
Q  81 tagtgtatcatggaacaatagcggtttgttcaaa 114  Q
    ||||||||||||||||||||||| ||||||||||    
T  6626745 tagtgtatcatggaacaatagcgatttgttcaaa 6626778  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000007; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 18 - 114
Target Start/End: Original strand, 38622842 - 38622938
Alignment:
Q  18 gtttgttcaaattccactacacaacagtgctataaccgctacttcacaatgttctgtactaagtagtgtatcatggaacaatagcggtttgttcaaa 114  Q
    ||||||||||||| | ||| |||||| ||||||| |||||| || ||||  || ||| |||| |||||||||||||||||||| || ||| ||||||    
T  38622842 gtttgttcaaatttcgctatacaacaatgctatagccgctatttgacaacattttgtgctaaatagtgtatcatggaacaatatcgatttattcaaa 38622938  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 16 - 51
Target Start/End: Original strand, 28976333 - 28976368
Alignment:
Q  16 tggtttgttcaaattccactacacaacagtgctata 51  Q
    |||||||||||||||||||||||||||| |||||||    
T  28976333 tggtttgttcaaattccactacacaacaatgctata 28976368  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 121
Target Start/End: Original strand, 28976435 - 28976484
Alignment:
Q  72 tgtactaagtagtgtatcatggaacaatagcggtttgttcaaactccact 121  Q
    |||||||| ||||||||||||||| |||||| ||||||| ||| ||||||    
T  28976435 tgtactaaatagtgtatcatggaaaaatagcagtttgtttaaattccact 28976484  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 121
Target Start/End: Original strand, 33714190 - 33714293
Alignment:
Q  18 gtttgttcaaattccactacacaacagtgctataaccgctacttcacaatgttctgtactaagtagtgtatcatggaacaatagcggtttgttcaaactc 117  Q
    ||||||||||||||| |||| || ||||| ||||||  ||| |||||||| || |||||||| | |  |||| |||||||| |||| |||||||||| ||    
T  33714190 gtttgttcaaattccgctacgcatcagtgttataacgtctatttcacaatattttgtactaaatggcttatcgtggaacaacagcgatttgttcaaattc 33714289  T
Q  118 cact 121  Q
    ||||    
T  33714290 cact 33714293  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 114
Target Start/End: Original strand, 26275538 - 26275599
Alignment:
Q  53 ccgctacttcacaatgttctgtactaagtagtgtatcatggaacaatagcggtttgttcaaa 114  Q
    |||||| |||||||| || |||||||| ||| ||||  ||||||||||||| ||||||||||    
T  26275538 ccgctatttcacaatattttgtactaaatagcgtattttggaacaatagcgatttgttcaaa 26275599  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 14 - 51
Target Start/End: Complemental strand, 7877887 - 7877850
Alignment:
Q  14 tatggtttgttcaaattccactacacaacagtgctata 51  Q
    |||||||||||||||||||||||||| |||||||||||    
T  7877887 tatggtttgttcaaattccactacactacagtgctata 7877850  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 46 - 114
Target Start/End: Complemental strand, 1310200 - 1310132
Alignment:
Q  46 gctataaccgctacttcacaatgttctgtactaagtagtgtatcatggaacaatagcggtttgttcaaa 114  Q
    |||||| |||||| |||||||| |  |||||||| |||||||||| |||||||||||  ||||||||||    
T  1310200 gctatagccgctatttcacaatatattgtactaaatagtgtatcaaggaacaatagcaatttgttcaaa 1310132  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 51
Target Start/End: Original strand, 18899949 - 18899982
Alignment:
Q  18 gtttgttcaaattccactacacaacagtgctata 51  Q
    ||||||||||||||| ||||||||||||||||||    
T  18899949 gtttgttcaaattccgctacacaacagtgctata 18899982  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 47 - 114
Target Start/End: Complemental strand, 431050 - 430983
Alignment:
Q  47 ctataaccgctacttcacaatgttctgtactaagtagtgtatcatggaacaatagcggtttgttcaaa 114  Q
    ||||| |||||| || ||||| || ||||||||||||| ||| |||||||||||| | ||||||||||    
T  431050 ctatagccgctatttaacaatattttgtactaagtagtttataatggaacaatagtgatttgttcaaa 430983  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 114
Target Start/End: Original strand, 8928378 - 8928458
Alignment:
Q  34 ctacacaacagtgctataaccgctacttcacaatgttctgtactaagtagtgtatcatggaacaatagcggtttgttcaaa 114  Q
    ||||||||||||| | || | | || |||| ||| || |||||||| ||| ||||||| ||||||||||| ||||||||||    
T  8928378 ctacacaacagtgttgtagcagttatttcagaatattttgtactaaatagcgtatcatcgaacaatagcgatttgttcaaa 8928458  T

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