View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10954A_low_168 (Length: 319)
Name: NF10954A_low_168
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_168 |
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Alignment Details
Target: chr7 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 2 - 313
Target Start/End: Original strand, 33905234 - 33905545
Alignment:
| Q |
2 |
agatgaatggacaagaatgtggaacagattgaaagaagttgaaaaattctttgaatttcagttcccttctaaggaaggtgatgctgttcaaatgatttgg |
101 |
Q |
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| T |
33905234 |
agatgaatggacaagaatgtggaacagattgaaagaagttgaaaaattctttgaatttcagttcccttctaaggaaggtgatgctgttgaaatgatttgg |
33905333 |
T |
|
| Q |
102 |
caagctgtttcacgtaaggttccttttatgaagttgaaaacaaacaggtctaggagattttttagagccctttatggtaataataaatataaggggcata |
201 |
Q |
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| T |
33905334 |
caagctgtttcacgtaaggttccttttatgaagttgaaaacaaacaggtctaggagattttttagagccctttatggtaataataaatataaggggcata |
33905433 |
T |
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| Q |
202 |
aatcaatacatgcaccacctaatttttggtgatattggtacatgaagttttgtctttagaaattcaagaatctttttatatacaatatagttatgatttt |
301 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
33905434 |
aatcaatacatgcaccacctaatttttggtgatattggtacatgaagttttgtctttagaaattcaagaatgtttttatatacaatatagttatgatttt |
33905533 |
T |
|
| Q |
302 |
gatagtgaaatt |
313 |
Q |
| |
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|||||||||||| |
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| T |
33905534 |
gatagtgaaatt |
33905545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 67; Significance: 9e-30; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 9 - 139
Target Start/End: Complemental strand, 9326358 - 9326228
Alignment:
| Q |
9 |
tggacaagaatgtggaacagattgaaagaagttgaaaaattctttgaatttcagttcccttctaaggaaggtgatgctgttcaaatgatttggcaagctg |
108 |
Q |
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||||||| ||||||||||| |||||||| |||||| | |||||||||| | | || || |||||||||||||||||||| ||||||||||||||||||| |
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| T |
9326358 |
tggacaaaaatgtggaacaagttgaaagaggttgaacatttctttgaatataattttccatctaaggaaggtgatgctgtacaaatgatttggcaagctg |
9326259 |
T |
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| Q |
109 |
tttcacgtaaggttccttttatgaagttgaa |
139 |
Q |
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|||||| ||| ||||||| |||||| ||||| |
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| T |
9326258 |
tttcacataaagttccttctatgaaattgaa |
9326228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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