View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10954A_low_170 (Length: 317)

Name: NF10954A_low_170
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10954A_low_170
NF10954A_low_170
[»] chr8 (3 HSPs)
chr8 (2-312)||(4146063-4146373)
chr8 (272-312)||(8018266-8018306)
chr8 (225-312)||(17654700-17654787)
[»] chr3 (1 HSPs)
chr3 (220-312)||(41430382-41430474)
[»] chr6 (1 HSPs)
chr6 (225-312)||(12734679-12734766)
[»] chr7 (1 HSPs)
chr7 (235-312)||(30269629-30269706)
[»] chr1 (2 HSPs)
chr1 (237-312)||(31525096-31525171)
chr1 (235-312)||(44269660-44269737)
[»] chr5 (2 HSPs)
chr5 (225-312)||(11106952-11107039)
chr5 (221-300)||(42367588-42367667)


Alignment Details
Target: chr8 (Bit Score: 282; Significance: 1e-158; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 2 - 312
Target Start/End: Original strand, 4146063 - 4146373
Alignment:
Q  2 gggtagattattcttgtacaaataaaaacaaaagaacttagaagtcaactcgagtattgcttgcattcacgcttctttaatgtcaaaatttacattttca 101  Q
    |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4146063 gggtagctttttcttgtacaaataaaaacaaaagaacttagaagtcaactcgagtattgcttgcattcacgcttctttaatgtcaaaatttacattttca 4146162  T
Q  102 atccttaagccctttagtctctttatgtgtatatataaatagttgttggagcaaaggaaatgttacgatatatcacactttccgagaagtgaatcgatgt 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4146163 atccttaagccctttagtctctttatgtgtatatataaatagttgttggagcaaaggaaatgttacgatatatcacactttccgagaagtgaatcgatgt 4146262  T
Q  202 atagannnnnnngttaagtttgatgcctcgtcgaactttgagtttctttgtcacgtgtctacttcgacgaatcttttgaattttcttcggagtcatgcag 301  Q
    |||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4146263 atagatttttttgttaagtttgatgcctcgtcgaactttgagtttctttgtcacgtgtctacttcgacgaatcttttgaattttcttcggagtcatgcag 4146362  T
Q  302 ctggaactttt 312  Q
    |||||||||||    
T  4146363 ctggaactttt 4146373  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 272 - 312
Target Start/End: Complemental strand, 8018306 - 8018266
Alignment:
Q  272 atcttttgaattttcttcggagtcatgcagctggaactttt 312  Q
    ||||||||||||||||||||||| ||||||||| |||||||    
T  8018306 atcttttgaattttcttcggagtgatgcagctgaaactttt 8018266  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 225 - 312
Target Start/End: Complemental strand, 17654787 - 17654700
Alignment:
Q  225 tgcctcgtcgaactttgagtttctttgtcacgtgtctacttcgacgaatcttttgaattttcttcggagtcatgcagctggaactttt 312  Q
    |||||| || |||||||||||||||||||| | |||| || |  || ||| ||||||||||||| ||||| ||||| ||| |||||||    
T  17654787 tgcctcatcaaactttgagtttctttgtcatgagtcttctccatcggatcgtttgaattttctttggagtgatgcatctgaaactttt 17654700  T

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Target: chr3 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 220 - 312
Target Start/End: Complemental strand, 41430474 - 41430382
Alignment:
Q  220 tttgatgcctcgtcgaactttgagtttctttgtcacgtgtctacttcgacgaatcttttgaattttcttcggagtcatgcagctggaactttt 312  Q
    |||| |||||| || |||||||||||||||||||||| |||| ||| | || ||||||||||||||||||||||| |||||||||||||||||    
T  41430474 tttgctgcctcatcaaactttgagtttctttgtcacgagtctcctttggcggatcttttgaattttcttcggagtgatgcagctggaactttt 41430382  T

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Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 225 - 312
Target Start/End: Original strand, 12734679 - 12734766
Alignment:
Q  225 tgcctcgtcgaactttgagtttctttgtcacgtgtctacttcgacgaatcttttgaattttcttcggagtcatgcagctggaactttt 312  Q
    |||||| || |||||||||||||||| ||||| |||| || | ||| ||||||||||| ||||||||||| |||||||||||||||||    
T  12734679 tgcctcatcaaactttgagtttctttatcacgagtctcctccaacggatcttttgaatcttcttcggagtgatgcagctggaactttt 12734766  T

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Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 235 - 312
Target Start/End: Complemental strand, 30269706 - 30269629
Alignment:
Q  235 aactttgagtttctttgtcacgtgtctacttcgacgaatcttttgaattttcttcggagtcatgcagctggaactttt 312  Q
    |||||||||||||||||||||| |||| || | || |||||||| || |||||||||||| |||||||||||||||||    
T  30269706 aactttgagtttctttgtcacgagtctcctccaacaaatcttttcaactttcttcggagtgatgcagctggaactttt 30269629  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 237 - 312
Target Start/End: Original strand, 31525096 - 31525171
Alignment:
Q  237 ctttgagtttctttgtcacgtgtctacttcgacgaatcttttgaattttcttcggagtcatgcagctggaactttt 312  Q
    |||||||||||||||||||| |||| || | ||| ||||||||||| ||||||| ||| ||||||||||| |||||    
T  31525096 ctttgagtttctttgtcacgagtctcctccaacggatcttttgaatcttcttcgcagtgatgcagctggagctttt 31525171  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 235 - 312
Target Start/End: Complemental strand, 44269737 - 44269660
Alignment:
Q  235 aactttgagtttctttgtcacgtgtctacttcgacgaatcttttgaattttcttcggagtcatgcagctggaactttt 312  Q
    |||||||||||||||||||||| |||| || |   | ||||||||||| ||||||| ||| |||||||||||||||||    
T  44269737 aactttgagtttctttgtcacgagtctcctccagtggatcttttgaatcttcttcgaagtgatgcagctggaactttt 44269660  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 225 - 312
Target Start/End: Original strand, 11106952 - 11107039
Alignment:
Q  225 tgcctcgtcgaactttgagtttctttgtcacgtgtctacttcgacgaatcttttgaattttcttcggagtcatgcagctggaactttt 312  Q
    |||||| || |||| ||||||||||||| ||| |||| || | ||| ||||||||||| ||||||||||| ||| || ||||||||||    
T  11106952 tgcctcatcaaactctgagtttctttgttacgagtctcctccaacggatcttttgaatcttcttcggagtgatgtagttggaactttt 11107039  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 221 - 300
Target Start/End: Complemental strand, 42367667 - 42367588
Alignment:
Q  221 ttgatgcctcgtcgaactttgagtttctttgtcacgtgtctacttcgacgaatcttttgaattttcttcggagtcatgca 300  Q
    |||||| ||| || |||||| ||||||||||||| | |||| |||||||| ||||||| | ||||||| ||||| |||||    
T  42367667 ttgatgactcatcaaactttaagtttctttgtcaagagtcttcttcgacggatcttttaagttttctttggagtgatgca 42367588  T

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