View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10954A_low_175 (Length: 313)
Name: NF10954A_low_175
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_175 |
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Alignment Details
Target: chr5 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 7 - 301
Target Start/End: Complemental strand, 11173210 - 11172903
Alignment:
| Q |
7 |
agatagacttcgagaacaataccttcagtgaaagcctttgtgctatgctgaagttaattggactcttcatatttgaattgtatgtgtcatatagaaaact |
106 |
Q |
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| T |
11173210 |
agatagacttcgagaacaataccttcagtgaa-gcctttgtgctatgctgaagttaattggaatcttcatatttgaattgtatgtgtcatatagaaaact |
11173112 |
T |
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| Q |
107 |
ttgtttctcatcattggtgaatatggactcataagttaataagttattcggttgagtcggatttttcagttaaatttgtttattggagggtataatgttg |
206 |
Q |
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| T |
11173111 |
ttgtttctcatcattggtgaatatggattcatatgctaataagttattcggttgagtcggatttttcagttaaatttgtttattggggggtataa---tg |
11173015 |
T |
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| Q |
207 |
ttttccatattata-----------------tatttcacctgggattattatatattatggtcattgttgctataaatcaatttatcatttgctaatttt |
289 |
Q |
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| T |
11173014 |
ttttccatattatatatatatgtacttgaattatttcacctgggattattatatattatggtcattgttgctaaatatcaatttatcatttggtaatttt |
11172915 |
T |
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| Q |
290 |
gtgtgtgatatt |
301 |
Q |
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|||||||||||| |
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| T |
11172914 |
gtgtgtgatatt |
11172903 |
T |
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