View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10954A_low_178 (Length: 311)
Name: NF10954A_low_178
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_178 |
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Alignment Details
Target: chr3 (Bit Score: 280; Significance: 1e-157; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 14 - 305
Target Start/End: Original strand, 50442045 - 50442336
Alignment:
| Q |
14 |
ttccttaagaaattgaatacatacagataaaaatctcttaaccaagctagaaatttaaacttttattaatgtttggagatataaagttgaaacagtgcaa |
113 |
Q |
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| T |
50442045 |
ttccttaagaaattgaatacatactgataaaaatctcttaaccaagctagaaatttaaacttttattaatgtttggcgatataaagttgaaacagtgcaa |
50442144 |
T |
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| Q |
114 |
tctaaagttacatattgattatttttcatgttaattatcagaatggatggacggtacaaaactagaagctagaagtaaaatttgtaaaatgtgatgttac |
213 |
Q |
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| T |
50442145 |
tctaaagttacatattgattatttttcatgttaattatcagaatggatggacggtacaaaactagaagctagaagtaaaatttgtaaaatgtgatgttac |
50442244 |
T |
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| Q |
214 |
ttagagaaatggatgtatacttgagcaaactagtttttgttgaagagccaagaatcagatgctcaattcctgcctgagaagcatattcaatc |
305 |
Q |
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| T |
50442245 |
ttagagaaatggatgtatacttgagcaaactagtttttgttgaagagccaagaatcagatgctcaattcctgcctgcgaagcatattcaatc |
50442336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 121 - 305
Target Start/End: Original strand, 50447057 - 50447237
Alignment:
| Q |
121 |
ttacatattgattatttttcatgttaattatcagaatggatggacggtacaaaactagaagctagaagtaaaatttgtaaaatgtgatgttacttagaga |
220 |
Q |
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| T |
50447057 |
ttacatgttgattattgtttgtgttaattctcagaagggatgg----taagaaactataagctagaagtaaaatttgcaaaatgtgatgctacttaggaa |
50447152 |
T |
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| Q |
221 |
aatggatgtatacttgagcaaactagtttttgttgaagagccaagaatcagatgctcaattcctgcctgagaagcatattcaatc |
305 |
Q |
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| T |
50447153 |
aatggatgcatacttgtgcaaactagtttttgctgaagagccaagaatcagatgctcaattcctacttgagaagcatattcaatc |
50447237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 166 - 305
Target Start/End: Original strand, 50421965 - 50422104
Alignment:
| Q |
166 |
ggtacaaaactagaagctagaagtaaaatttgtaaaatgtgatgttacttagagaaatggatgtatacttgagcaaactagtttttgttgaagagccaag |
265 |
Q |
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|||| |||||||||||||| ||||||| |||| || ||| ||| |||||| | |||| |||| ||||| |||||| ||| | ||||||| |||||||| |
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| T |
50421965 |
ggtagaaaactagaagctaaaagtaaactttgcaacatgctatgctacttataaaaatagatgcatactcaagcaaattagctcttgttgaggagccaag |
50422064 |
T |
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| Q |
266 |
aatcagatgctcaattcctgcctgagaagcatattcaatc |
305 |
Q |
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| T |
50422065 |
aaccaaatgctcaattcccgtccgagaggcatattcaatc |
50422104 |
T |
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