View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10954A_low_18 (Length: 447)
Name: NF10954A_low_18
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 1 - 445
Target Start/End: Original strand, 53548874 - 53549318
Alignment:
| Q |
1 |
tcatgggaagtggaaaggttctgatgtcgccattaagagaataaaagctagttgttttgctggaagaccatccgaaagagcaagactggtaagattagta |
100 |
Q |
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| T |
53548874 |
tcatgggaagtggaaaggttctgatgtcgccattaagagaataaaagctagttgttttgctggaagaccatccgaaagagcaagactggtaagattagta |
53548973 |
T |
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| Q |
101 |
tctaatagcttttcatatacgtttaagtaactgttgatcggtgatattagaatgcttaatattttgttctatatagaaatgcactcaatttgtgttggat |
200 |
Q |
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| T |
53548974 |
tctaatagcttttcatatacgtttaagtaactgttgatcggtgatattagaatgcttaatattttgttctatatagaaatgcactcaatttgtgttggat |
53549073 |
T |
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| Q |
201 |
ggnnnnnnntaagtctgaatttccccattttaagtaaattaaaaatagggaagtgataaaacaagtaaaaatacttacaacttactagtagttttgtcta |
300 |
Q |
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| T |
53549074 |
ggaaaaaaataaatctgaatttccccattttaagtaaattaaaaatagggaagtgataaaacaagtaaaaatacttacaacttactagtagttttgtcta |
53549173 |
T |
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| Q |
301 |
tattaaaacattcggtggatccccaactctgtagtgacttcattttggttgttgtcccagattgccgatttctggaaggaggcattgatgcttagttcat |
400 |
Q |
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| T |
53549174 |
tattaaaacattcggtggatccccaactctgtagtgatttcattttggttgttgtcccagattgccgatttctggaaggaggcattgatgcttagttcat |
53549273 |
T |
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| Q |
401 |
tgcatcatccaaatgttgtctctttctatgatattattcgagatg |
445 |
Q |
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| T |
53549274 |
tgcatcatccaaatgttgtctctttctatggtattgttcgtgatg |
53549318 |
T |
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