View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10954A_low_180 (Length: 310)
Name: NF10954A_low_180
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_180 |
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| [»] chr4 (3 HSPs) |
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| [»] chr8 (1 HSPs) |
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| [»] scaffold0002 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 297; Significance: 1e-167; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 14 - 310
Target Start/End: Original strand, 18148756 - 18149052
Alignment:
| Q |
14 |
agacgtattcctacaggtaaagggggttcgaataaatattggttgtgtttgaaaagttatgaatcgattgataagtccaattccaatatcttgatttcta |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18148756 |
agacgtattcctacaggtaaagggggttcgaataaatattggttgtgtttgaaaagttatgaatcgattgataagtccaattccaatatcttgatttcta |
18148855 |
T |
|
| Q |
114 |
acgacaatgcaccgtgaaccgatatatatatcgtctgctactacacgaccaattaatgtttgtatcaaaattctttctggtatcattccatttcgggtat |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18148856 |
acgacaatgcaccgtgaaccgatatatatatcgtctgctactacacgaccaattaatgtttgtatcaaaattctttctggtatcattccatttcgggtat |
18148955 |
T |
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| Q |
214 |
ttacagaaatcccgcgaatcgtaccgcaatctgttcgacgtacaacaatgtgttgaaccacttcaacaagtcgacgtgtaagatatccagcatctga |
310 |
Q |
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| T |
18148956 |
ttacagaaatcccgcgaatcgtaccgcaatctgttcgacgtacaacaatgtgttgaaccacttcaacaagtcgacgtgtaagatatccagcatctga |
18149052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 133 - 254
Target Start/End: Complemental strand, 8438305 - 8438184
Alignment:
| Q |
133 |
cgatatatatatcgtctgctactacacgaccaattaatgtttgtatcaaaattctttctggtatcattccatttcgggtatttacagaaatcccgcgaat |
232 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8438305 |
cgatatgtatatcgtctgctactacacgaccaattaatgtttgtatcaaaattctttctggtatcattccatttcgggtatttacagaaatcccgcgaat |
8438206 |
T |
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| Q |
233 |
cgtaccgcaatctgttcgacgt |
254 |
Q |
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|||| ||||||||||||||||| |
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| T |
8438205 |
cgtatcgcaatctgttcgacgt |
8438184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 71 - 144
Target Start/End: Complemental strand, 34210368 - 34210295
Alignment:
| Q |
71 |
tatgaatcgattgataagtccaattccaatatcttgatttctaacgacaatgcaccgtgaaccgatatatatat |
144 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34210368 |
tatgaatcgattgataagtccaattccaatatcttgatttctaacgacaatgcaccgtgaaccgatatatatat |
34210295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 70 - 310
Target Start/End: Complemental strand, 5583482 - 5583244
Alignment:
| Q |
70 |
ttatgaatcgattgataagtccaattccaatatcttgatttctaacgacaatgcaccgtgaaccgatatatatatcgtctgctactacacgaccaattaa |
169 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
5583482 |
ttattaatcgattgataagtccaattccaatatcttgatttctaacgacaatgcaccgtgaaccgatatatat--cgtctgctactacacgaccaattaa |
5583385 |
T |
|
| Q |
170 |
tgtttgtatcaaaattctttctggtatcattccatttcgggtatttacagaaatcccgcgaatcgtaccgcaatctgttcgacgtacaacaatgtgttga |
269 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
5583384 |
tgtttgtatcaaaattctttctggtatcattccatttcgggtatttacagaaatcccgcgaatcgtaccgcaatctgttcgacgtaaaacaatgtgttga |
5583285 |
T |
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| Q |
270 |
accacttcaacaagtcgacgtgtaagatatccagcatctga |
310 |
Q |
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| T |
5583284 |
accacttcaacaagtcgacgtgtaagatatccagcatctga |
5583244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 173; Significance: 5e-93; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 45 - 233
Target Start/End: Complemental strand, 12952885 - 12952697
Alignment:
| Q |
45 |
ataaatattggttgtgtttgaaaagttatgaatcgattgataagtccaattccaatatcttgatttctaacgacaatgcaccgtgaaccgatatatatat |
144 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12952885 |
ataaatattggttgtgtttgaaaagttatgaatcgattgataagtccaattccaatatcttgatttctaacgacaatgcaccgtgaaccgatatatatat |
12952786 |
T |
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| Q |
145 |
cgtctgctactacacgaccaattaatgtttgtatcaaaattctttctggtatcattccatttcgggtatttacagaaatcccgcgaatc |
233 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||||||| |
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| T |
12952785 |
cgtctgctactacacgaccaattaatgtttgtatcaaaattctttctggtaaaattccatttcaggtatttacagaaatccggcgaatc |
12952697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 56 - 105
Target Start/End: Complemental strand, 2363421 - 2363372
Alignment:
| Q |
56 |
ttgtgtttgaaaagttatgaatcgattgataagtccaattccaatatctt |
105 |
Q |
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|||||||||||||| |||||| ||||||||||||||||||||||||||| |
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| T |
2363421 |
ttgtgtttgaaaagctatgaactgattgataagtccaattccaatatctt |
2363372 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 119; Significance: 8e-61; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 14 - 183
Target Start/End: Original strand, 39932710 - 39932872
Alignment:
| Q |
14 |
agacgtattcctacaggtaaagggggttcgaataaatattggttgtgtttgaaaagttatgaatcgattgataagtccaattccaatatcttgatttcta |
113 |
Q |
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|
|||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
39932710 |
agacgtattcctacaggtaaagggagttcgaataaatat-----gtgtttgaaaagttatgaatcgattgataagtccaattccaataccttgatttcta |
39932804 |
T |
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| Q |
114 |
acgacaatgcaccgtgaaccgatatatatatcgtctgctactacacgaccaattaatgtttgtatcaaaa |
183 |
Q |
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||||||||||||||||||| | |||||||||||||||||||| ||| |||||||||||||||||||||| |
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| T |
39932805 |
acgacaatgcaccgtgaactg--atatatatcgtctgctactatacggccaattaatgtttgtatcaaaa |
39932872 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 116; Significance: 5e-59; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 68 - 309
Target Start/End: Complemental strand, 226134 - 225896
Alignment:
| Q |
68 |
agttatgaatcgattgataagtccaattccaatatcttgatttctaacgacaatgcaccgtgaaccgatatatatatcgtctgctactacacgaccaatt |
167 |
Q |
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|
||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
226134 |
agttatgaatcgattgactaatccaattccaatatcttgatttctaacgacaatgcaccgtgaaccgatatatatatcgtctgctaatacacgaccaatt |
226035 |
T |
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| Q |
168 |
aatgtttgtatcaaaattctttctggtatcattccatttcgggtatttacagaaatcccgcgaatcgtaccgcaatctgttcgacgtacaacaatgtgtt |
267 |
Q |
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| |||||| | |||| | |||| | |||| |||||| | | | |||||||||| || || || ||||| |||||| ||| ||| |||| ||| |||| |
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| T |
226034 |
agtgtttggacaaaaagtttttccg---tcatcccattttgaggacttacagaaatacctcggatagtaccacaatctcttctacgcacaataatatgtt |
225938 |
T |
|
| Q |
268 |
gaaccacttcaacaagtcgacgtgtaagatatccagcatctg |
309 |
Q |
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|||| ||||||||||||| ||||||||||||||||||||||| |
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| T |
225937 |
gaactacttcaacaagtctacgtgtaagatatccagcatctg |
225896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 161 - 243
Target Start/End: Original strand, 30234768 - 30234850
Alignment:
| Q |
161 |
accaattaatgtttgtatcaaaattctttctggtatcattccatttcgggtatttacagaaatcccgcgaatcgtaccgcaat |
243 |
Q |
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|||||||||||||||||||||||| ||||||| ||||||||||||| ||||||||| |||| ||||| || | ||||||||| |
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| T |
30234768 |
accaattaatgtttgtatcaaaatcctttctgatatcattccattttgggtatttattgaaaacccgcaaagcataccgcaat |
30234850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 269 - 310
Target Start/End: Original strand, 33992867 - 33992908
Alignment:
| Q |
269 |
aaccacttcaacaagtcgacgtgtaagatatccagcatctga |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
33992867 |
aaccacttcaacaagtcgacgtgtaagatatccagcatctga |
33992908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 253 - 289
Target Start/End: Complemental strand, 8967070 - 8967034
Alignment:
| Q |
253 |
gtacaacaatgtgttgaaccacttcaacaagtcgacg |
289 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
8967070 |
gtacaacaatgtgttgaaccacttcaacaagtcgacg |
8967034 |
T |
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