View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10954A_low_187 (Length: 305)

Name: NF10954A_low_187

Description: NF10954A

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF10954A_low_187

[»] chr3 (1 HSPs)

Target: chr3 (Bit Score: 302; Significance: 1e-170; HSPs: 1)

Name: chr3

Description:

Target: chr3; HSP #1

Raw Score: 302; E-Value: 1e-170

Query Start/End: Original strand, 4 - 305

Target Start/End: Complemental strand, 38055909 - 38055608

Alignment:

Q	4	atcagagaaaaattacaacaacattccagacagcaagatgtcagtattggcaatgtatcaattcatttacttctgcttcagtttgtagcttgctgatctc	103	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	38055909	atcagagaaaaattacaacaacattccagacagcaagatgtcagtattggcaatgtatcaattcatttacttctgcttcagtttgtagcttgctgatctc	38055810	T

Q	104	ccagatggagttatcgatggtcttcttaaggacaggaaattttgtgttaatgtcagacttctctctatccaacttgcttatttgtgtttgtgaatttgca	203	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	38055809	ccagatggagttatcgatggtcttcttaaggacaggaaattttgtgttaatgtcagacttctctctatccaacttgcttatttgtgtttgtgaatttgca	38055710	T

Q	204	atcttttcatcaaacttggtcttcgattccatcaactcctcatcaggttctaataaatatacaaagcagaagaaagcatgagaaacttacaatatattat	303	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	38055709	atcttttcatcaaacttggtcttcgattccatcaactcctcatcaggttctaataaatatacaaagcagaagaaagcatgagaaacttacaatatattat	38055610	T

Q	304	ga	305	Q
		\|\|
T	38055609	ga	38055608	T

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