View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10954A_low_188 (Length: 305)
Name: NF10954A_low_188
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_188 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 143; Significance: 4e-75; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 155 - 305
Target Start/End: Original strand, 28447982 - 28448132
Alignment:
| Q |
155 |
tttgggctttggctggccttggcttcggtgttcctctctctggggttcctattttgtgcgttggaagttacggccttcaatcttttgttggagtggttgt |
254 |
Q |
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| T |
28447982 |
tttgggctttggctggccttggcttcggtgttcctctctctggggttcctattttgtgcgttggaagttacggccttcaatcttttgttggagtggttgt |
28448081 |
T |
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| Q |
255 |
ctatttctataggcgtcaggcctacagacctcccctctacatcgatgatga |
305 |
Q |
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| T |
28448082 |
ctatttctataggcatcagacctacagacctcccctctacatcgatgatga |
28448132 |
T |
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Target: chr2 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 158 - 235
Target Start/End: Original strand, 18690607 - 18690684
Alignment:
| Q |
158 |
gggctttggctggccttggcttcggtgttcctctctctggggttcctattttgtgcgttggaagttacggccttcaat |
235 |
Q |
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| T |
18690607 |
gggctttggttggccttggcttcggtgttcctctctctgaggttcctagtttttgcgttggaagttacaaccttcaat |
18690684 |
T |
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