View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10954A_low_189 (Length: 304)
Name: NF10954A_low_189
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_189 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 13 - 304
Target Start/End: Original strand, 38566802 - 38567093
Alignment:
| Q |
13 |
agaacctgtggcagtttatcaatgaatttggcagcgtttgcaagttcagatgcagatcttatttcttcaatcgttgctccatctttaccgtatgaaatgt |
112 |
Q |
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| T |
38566802 |
agaacctggggcagtttatcaatgaatttggcagcgtttgcaagttcagatgcagatcttatctcttcaatcgttgctccatctttaccatatgaaatgt |
38566901 |
T |
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| Q |
113 |
tatccttaatgctggatgcaaacaacactggctcctggctaacaagaccaattttccctctgatccacctgacctgaaattctttcatgttaattccatc |
212 |
Q |
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| T |
38566902 |
tatccttaatgctggatgcaaacaacactggctcctggctaacaagaccaattttccctctgatccacctgacctgaaattctttcatgttaattccatc |
38567001 |
T |
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| Q |
213 |
gataagaacttcacctgcctgtggatcatagaatctctctaccaaattgataattgtcgactttccacttccactttgtccaaccaatgctg |
304 |
Q |
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| T |
38567002 |
gataagaacttcacctgcctgtggatcatagaatctctctaccaaactgataattgtcgactttccacttccactttgtccaaccaatgctg |
38567093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 13 - 302
Target Start/End: Original strand, 38525677 - 38525966
Alignment:
| Q |
13 |
agaacctgtggcagtttatcaatgaatttggcagcgtttgcaagttcagatgcagatcttatttcttcaatcgttgctccatctttaccgtatgaaatgt |
112 |
Q |
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| T |
38525677 |
agaacctgtggaagtttatcaatgaatttggcggcgtttgcaagttcggatgcagatcttatttcttcaattgttgctccatctttaccatatgcaatgt |
38525776 |
T |
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| Q |
113 |
tatccttaatgctggatgcaaacaacactggctcctggctaacaagaccaattttccctctgatccacctgacctgaaattctttcatgttaattccatc |
212 |
Q |
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| T |
38525777 |
tatccttaatgctggatgcaaataacactggctcctggctgacaagaccaattttccctctgatccacctaagctgaagttctttcatgttaattccatc |
38525876 |
T |
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| Q |
213 |
gataagaacttcacctgcctgtggatcatagaatctctctaccaaattgataattgtcgactttccacttccactttgtccaaccaatgc |
302 |
Q |
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| T |
38525877 |
gataagtacttcaccggcctgtggatcatagaatctttctaccaaactaataactgtggactttccacttccactttgtccaaccaatgc |
38525966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 16 - 299
Target Start/End: Complemental strand, 51199755 - 51199472
Alignment:
| Q |
16 |
acctgtggcagtttatcaatgaatttggcagcgtttgcaagttcagatgcagatcttatttcttcaatcgttgctccatctttaccgtatgaaatgttat |
115 |
Q |
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| T |
51199755 |
acctgaggaagtttatctataaatttggcagcattagcaagctcggctgcagctctgatttcttcatcagtagcaccatccttgccatatgcaatgttct |
51199656 |
T |
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| Q |
116 |
ccttaatgctggatgcaaacaacactggctcctggctaacaagaccaattttccctctgatccacctgacctgaaattctttcatgttaattccatcgat |
215 |
Q |
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| T |
51199655 |
ctttaatgctgcaagtaaagagaacaggttcctggctgactaggcctattttctgtctgatccatttcagttgaaattctttgaggttgacaccgtcaat |
51199556 |
T |
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| Q |
216 |
aagaacttcacctgcctgtggatcatagaatctctctaccaaattgataattgtcgactttccacttccactttgtccaaccaa |
299 |
Q |
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| T |
51199555 |
gagaacttcaccagcctgtggatcataaaatctctctatcaaactgacaactgtggattttccactcccactttgccctaccaa |
51199472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 290
Target Start/End: Complemental strand, 51212687 - 51212627
Alignment:
| Q |
230 |
cctgtggatcatagaatctctctaccaaattgataattgtcgactttccacttccactttg |
290 |
Q |
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| T |
51212687 |
cctgtggatcataaaatctctctatcaaatttatcactgttgattttccactcccactttg |
51212627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 299
Target Start/End: Original strand, 49737314 - 49737396
Alignment:
| Q |
217 |
agaacttcacctgcctgtggatcatagaatctctctaccaaattgataattgtcgactttccacttccactttgtccaaccaa |
299 |
Q |
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| T |
49737314 |
agaatttcaccaccctgtggatcataaaatctctctatcaaactaataaccgtcgatttcccactcccactttgtcctaccaa |
49737396 |
T |
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