View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10954A_low_192 (Length: 303)
Name: NF10954A_low_192
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_192 |
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Alignment Details
Target: chr2 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 20 - 288
Target Start/End: Original strand, 23853152 - 23853420
Alignment:
| Q |
20 |
ctatccatatttaagggaagagactgaagcagagctgcaagtcgggtgggcacaacacaaccgtgacacaaccaacacaacttaaataggcatctcattt |
119 |
Q |
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| T |
23853152 |
ctatccatatttaagggaagagactgaagcagagctgcaagtcgggtgggcacaacacaaccgtgacacaaccaacacaacttaaataggcatctcattt |
23853251 |
T |
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| Q |
120 |
tattatgtcctttcatttgttcatttttatatttggaacgagtcatgttgatgttctatttccgtgcatatcttgagcacttatttatatttggggacac |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23853252 |
tattatgtcctttcatttgttcatttttatatttggaacgagtcatgttgatgttctatttccgtgcatatcttgagcacttatttatatttggggacac |
23853351 |
T |
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| Q |
220 |
cttatattcaaacacaatcgagtctctatgtaattgaactctagttaattggtatctatgttgatgtcc |
288 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23853352 |
cttatattcaaacacaattgagtctctatgtaattgaactctagttaattggtatctatgttgatgtcc |
23853420 |
T |
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