View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10954A_low_193 (Length: 301)
Name: NF10954A_low_193
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_193 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 20 - 291
Target Start/End: Original strand, 21831747 - 21832015
Alignment:
| Q |
20 |
cttggtatccaagtgccctcctcgaaagcgatcgtggtatttgatcactccattaataccatgtttgagatctaatgtcctcattgatgtttttatcggt |
119 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21831747 |
cttggtatccaagtgccctcctcgaaagccatcgtggtatttgatcactccattaataccatgtttgagatctaatgtcctcattgatgtttttatcggt |
21831846 |
T |
|
| Q |
120 |
ctacaaagnnnnnnnnnnnnnnnngcttattttaaatgtattttcaggttatttcaagttcgaactccatgtggttgatgagatctctataagatgaact |
219 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21831847 |
ctacaaagttttttttttttt---gcttattttaaatgtattttcaggttatttcaagttcgaactccatgtggttgatgagatctctataagatgaact |
21831943 |
T |
|
| Q |
220 |
tgttttgttgataccatatttgatgtaagagacgaatgctgattatcatgaaattatgcatcctattagtat |
291 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21831944 |
tgttttgttgataccatatttggtgtaagagacgaatgctgattatcatgaaattatgcatcctattagtat |
21832015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University