View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10954A_low_194 (Length: 300)
Name: NF10954A_low_194
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_194 |
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Alignment Details
Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 68 - 291
Target Start/End: Complemental strand, 29041798 - 29041571
Alignment:
| Q |
68 |
tatataagaattgtacctcaaaataaacttgcaccggaatagcatatac--catagtgataagata--ggtaagatcataaatgagaaaagaagatcaag |
163 |
Q |
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| T |
29041798 |
tatataagaattgtacctcaaaataaacttgcacctgaatagcatatatatcatagtggtaagatataggtaagatcataaatgagaaaagaagatcaag |
29041699 |
T |
|
| Q |
164 |
tcaagtctagaaatctacccaaaaatgaccaagtcaaaacttctgataaataaaagaaataataaataccaacaaatatttggtttaattggtaataatc |
263 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29041698 |
tcaagtctagaaatctacccaaaaatgaccaagtcaaaacttctgataaataaaagaaataataaataccaacaaatatttggtttaattggtaataatc |
29041599 |
T |
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| Q |
264 |
caactcatatcttataagagccagaacc |
291 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
29041598 |
caactcatatcttataagagccagaacc |
29041571 |
T |
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