View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10954A_low_195 (Length: 300)
Name: NF10954A_low_195
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_195 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 17 - 300
Target Start/End: Complemental strand, 34444329 - 34444046
Alignment:
| Q |
17 |
tccatactatcattctcattccttggtgtagcagcattgctaataacttcaaacggtgctttatagccatctccactaacatcaatttttgaagaagtgt |
116 |
Q |
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| T |
34444329 |
tccaaactaacattctcattccttggtgtagcagcattgctaataacttcaaacggtgctttatagccatctccactaacatcaatttttgaagaagtgt |
34444230 |
T |
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| Q |
117 |
ttatagatttccatgaagaggaattcaaaggaaaccaaattctatcgtaaacatcgtcttgatatctaccacttccattaaatgaaccaatgtcccatct |
216 |
Q |
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| T |
34444229 |
ttatagatttccatgaagaggaattcaaaggaaaccaaattctatcgtaaacatcgtcttgatatctaccacttccattaaatgaaccaatgtcccatct |
34444130 |
T |
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| Q |
217 |
tttgaaaagtaacaatgaagcagaatcaccgaactcagttttataaatagaactatcaactggtctaagttccaacgcggagat |
300 |
Q |
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| T |
34444129 |
tttgaaaagtaacaatgaagcagaatcaccgaactcagttttataaatagaactatcaactggtctaagttccaacgcggagat |
34444046 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 9 - 300
Target Start/End: Complemental strand, 34437590 - 34437299
Alignment:
| Q |
9 |
aagaatattccatactatcattctcattccttggtgtagcagcattgctaataacttcaaacggtgctttatagccatctccactaacatcaatttttga |
108 |
Q |
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||||| |||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |||| |||||||||||||||||||||||| |||||||| |
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| T |
34437590 |
aagaaaattccaaactatcattctcattccttggtgtagcagcattcctaataacttcaaatggtggtttatagccatctccactaacatctatttttga |
34437491 |
T |
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| Q |
109 |
agaagtgtttatagatttccatgaagaggaattcaaaggaaaccaaattctatcgtaaacatcgtcttgatatctaccacttccattaaatgaaccaatg |
208 |
Q |
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||||||| |||||||||||||||||||||| || | |||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
34437490 |
agaagtgcttatagatttccatgaagaggatttaagaggaaaccaaattctatcataaacatcatcttgatatctaccacttccattaaatgaaccaatg |
34437391 |
T |
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| Q |
209 |
tcccatcttttgaaaagtaacaatgaagcagaatcaccgaactcagttttataaatagaactatcaactggtctaagttccaacgcggagat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| ||||||||||||||| || ||||| |
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| T |
34437390 |
tcccatcttttgaaaagtaacaatgaagcagaatcaccaaactcagttttataaatagagttatcaattggtctaagttccaatgctgagat |
34437299 |
T |
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