View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10954A_low_198 (Length: 300)
Name: NF10954A_low_198
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_198 |
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Alignment Details
Target: chr8 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 7 - 280
Target Start/End: Original strand, 31523943 - 31524216
Alignment:
| Q |
7 |
tcatgcctatcatcgagctagctaaacgcttccaaatccaccacaatttcaaactcacaatcctcgccatcacttctcaaacctcacacactgaatctca |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31523943 |
tcatgcctatcatcgagctagctaaacgcttccaaatccaccacaatttcaaactcacaatcctcgccatcacttctcaaacctcacacactgaatctca |
31524042 |
T |
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| Q |
107 |
tattctcaaatcagccaccaacccctcactctacaacatcatccaaatcccatcaccaaacatttcctccctcctccccgtctccgccaccgtctgcacc |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31524043 |
tattctcaaatcagccaccaacccctcactctacaacatcatccaaatcccatcaccaaacatttcctccctcctccccgtctccgccaccgtctgcacc |
31524142 |
T |
|
| Q |
207 |
cgcatctttctaacaatgcgccactccatacctttcatcaaatccgcactcacaaacttaaccctccctccttc |
280 |
Q |
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||||||||||||||||||||||| |||||||||| ||||||||| ||||||||||||||||||||||||||||| |
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| T |
31524143 |
cgcatctttctaacaatgcgccattccataccttccatcaaatctgcactcacaaacttaaccctccctccttc |
31524216 |
T |
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