View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10954A_low_199 (Length: 300)

Name: NF10954A_low_199
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10954A_low_199
NF10954A_low_199
[»] chr1 (3 HSPs)
chr1 (1-286)||(11780145-11780431)
chr1 (1-164)||(10424602-10424765)
chr1 (16-75)||(30731478-30731537)
[»] chr7 (1 HSPs)
chr7 (2-281)||(17158562-17158845)
[»] chr6 (4 HSPs)
chr6 (4-170)||(14977618-14977784)
chr6 (107-278)||(11776308-11776482)
chr6 (107-163)||(9352421-9352477)
chr6 (107-155)||(24353638-24353686)
[»] chr2 (1 HSPs)
chr2 (1-281)||(12101765-12102043)
[»] chr5 (3 HSPs)
chr5 (3-170)||(5781913-5782080)
chr5 (8-278)||(19069436-19069709)
chr5 (107-164)||(11724701-11724758)
[»] chr3 (6 HSPs)
chr3 (18-164)||(16311632-16311778)
chr3 (18-164)||(18488416-18488562)
chr3 (18-164)||(18492626-18492772)
chr3 (12-175)||(19829018-19829181)
chr3 (26-164)||(16314023-16314161)
chr3 (26-164)||(18495017-18495155)
[»] chr8 (1 HSPs)
chr8 (8-164)||(17459431-17459587)


Alignment Details
Target: chr1 (Bit Score: 243; Significance: 1e-135; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 286
Target Start/End: Original strand, 11780145 - 11780431
Alignment:
Q  1 ggtacatgctcatgggcacccttcggactctccaccagatcctgtgggcgcggatgattatgttccacatcatccgagagcgttggagtaacatcgtcaa 100  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  11780145 ggtacatgctcatgggcacccttcggactctccaccagctcctgtgggcgcgaatgattatgttccacatcatccgagagcgttggagtaacatcgtcaa 11780244  T
Q  101 ctacatggttctccaactcctcccgcgatgtcggatgcgactgctccactctctcagaatgcacttcatcatgcaa-ccgggaaacaatttcaaacactg 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| | |||||||||||||||||||||    
T  11780245 ctacatggttctccaactcctcccgcgatgtcggatgcgactgcttcactctctcagaatgcatttcatcatgcaatcggggaaacaatttcaaacactg 11780344  T
Q  200 gcgtagctagtagcagctcctcactagaaatgttgtcaaacacgttatgcagtggaaagccgaaagatgttgacgacaatgatgtcc 286  Q
    |||||||||||||||||||||||||||||| | |||||||||||||||| |||||||||| ||||||||||||||||||||||||||    
T  11780345 gcgtagctagtagcagctcctcactagaaacgctgtcaaacacgttatgtagtggaaagctgaaagatgttgacgacaatgatgtcc 11780431  T

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Target: chr1; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 10424602 - 10424765
Alignment:
Q  1 ggtacatgctcatgggcacccttcggactctccaccagatcctgtgggcgcggatgattatgttccacatcatccgagagcgttggagtaacatcgtcaa 100  Q
    |||||| |||| | || |||||| |||||||||||||| ||| ||||||||| | |||||| |||||||||||| || |||||   ||  ||||| || |    
T  10424602 ggtacacgctcgtaggaacccttaggactctccaccagctcccgtgggcgcgaacgattatattccacatcatcagaaagcgtaacagagacatcatcca 10424701  T
Q  101 ctacatggttctccaactcctcccgcgatgtcggatgcgactgctccactctctcagaatgcac 164  Q
    | ||  ||||||||||  |||||||||||||| ||||| | || ||||||||||||||||||||    
T  10424702 ccacggggttctccaatacctcccgcgatgtcagatgcaattgttccactctctcagaatgcac 10424765  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 30731537 - 30731478
Alignment:
Q  16 gcacccttcggactctccaccagatcctgtgggcgcggatgattatgttccacatcatcc 75  Q
    |||||||| |||||||||||||| |||||||||| |  ||||| |||||||||| |||||    
T  30731537 gcacccttgggactctccaccagctcctgtgggctcacatgatcatgttccacaccatcc 30731478  T

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Target: chr7 (Bit Score: 150; Significance: 3e-79; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 2 - 281
Target Start/End: Original strand, 17158562 - 17158845
Alignment:
Q  2 gtacatgctcatgggcacccttcggactctccaccagatcctgtgggcgcggatgattatgttccacatcatccgagagcgttggagtaacatcgtcaac 101  Q
    |||||||||||||| | ||||| |||||||||||||  | ||  ||| ||| ||||||||| ||||||||||||||||| || | |||||||||||||||    
T  17158562 gtacatgctcatggtcccccttgggactctccaccaactactaggggtgcgaatgattatgctccacatcatccgagagtgtcgcagtaacatcgtcaac 17158661  T
Q  102 tacatggttctccaactcctcccgcgatgtcggatgcgactgctcc-actctctcagaatgcacttcatcatgc---aaccgggaaacaatttcaaacac 197  Q
     ||| ||||||||||||||||||||||| ||||||||||||| ||| ||||||||||||||||||||||| |||   |||  ||||||||||||||||||    
T  17158662 cacagggttctccaactcctcccgcgatatcggatgcgactgatcccactctctcagaatgcacttcatcgtgcgcaaactaggaaacaatttcaaacac 17158761  T
Q  198 tggcgtagctagtagcagctcctcactagaaatgttgtcaaacacgttatgcagtggaaagccgaaagatgttgacgacaatga 281  Q
    ||||||||| ||| ||||||  ||||||||||||||||||||||||||||| |||||||||| ||||| |||||||||||||||    
T  17158762 tggcgtagcgagtggcagcttttcactagaaatgttgtcaaacacgttatgtagtggaaagctgaaaggtgttgacgacaatga 17158845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 75; Significance: 1e-34; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 4 - 170
Target Start/End: Complemental strand, 14977784 - 14977618
Alignment:
Q  4 acatgctcatgggcacccttcggactctccaccagatcctgtgggcgcggatgattatgttccacatcatccgagagcgttggagtaacatcgtcaacta 103  Q
    ||||||||||||| |||||| |||||||||||||| ||| | |||  || ||||||||||||||||||||  || ||||| | |||||||||||||||      
T  14977784 acatgctcatgggaacccttgggactctccaccagctcccgcggggtcgaatgattatgttccacatcataagatagcgtagcagtaacatcgtcaaccg 14977685  T
Q  104 catggttctccaactcctcccgcgatgtcggatgcgactgctccactctctcagaatgcacttcatc 170  Q
       || ||| || ||||||||||||||||||||||||||||||||||||||| |||||||| |||||    
T  14977684 ttgggatctgcacctcctcccgcgatgtcggatgcgactgctccactctctcggaatgcacgtcatc 14977618  T

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Target: chr6; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 107 - 278
Target Start/End: Original strand, 11776308 - 11776482
Alignment:
Q  107 ggttctccaactcctcccgcgatgtcggatgcgactgctccactctctcagaatgcacttcatcatg--caac-cgggaaacaatttcaaacactggcgt 203  Q
    |||||||||||||||||||||||| | ||||| ||||||||||||||||||||||||| ||||| ||  ||||  |||||||||  || |||||||| ||    
T  11776308 ggttctccaactcctcccgcgatgactgatgcaactgctccactctctcagaatgcacatcatcgtgcacaacaggggaaacaacctctaacactggtgt 11776407  T
Q  204 agctagtagcagctcctcactagaaatgttgtcaaacacgttatgcagtggaaagccgaaagatgttgacgacaa 278  Q
    | |  || ||| |||||||  |||||| ||||||||| | ||||| | |||||||| ||||||  ||||||||||    
T  11776408 aacatgtggcaactcctcatgagaaattttgtcaaacgcattatgtaatggaaagctgaaagagtttgacgacaa 11776482  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 163
Target Start/End: Original strand, 9352421 - 9352477
Alignment:
Q  107 ggttctccaactcctcccgcgatgtcggatgcgactgctccactctctcagaatgca 163  Q
    ||||||||||| |||| ||||||||| || || |||| |||||||||||||||||||    
T  9352421 ggttctccaacacctctcgcgatgtcagacgcaactgttccactctctcagaatgca 9352477  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 155
Target Start/End: Original strand, 24353638 - 24353686
Alignment:
Q  107 ggttctccaactcctcccgcgatgtcggatgcgactgctccactctctc 155  Q
    |||||||||||||||||||||||||| ||||| |||||| | |||||||    
T  24353638 ggttctccaactcctcccgcgatgtctgatgcaactgcttcgctctctc 24353686  T

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Target: chr2 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 281
Target Start/End: Complemental strand, 12102043 - 12101765
Alignment:
Q  1 ggtacatgctcatgggcacccttcggactctccaccagatcctgtgggcgcggatgattat----gttccacatcatccgagagcgttggagtaacatcg 96  Q
    ||||||||||||| ||||||||| |||||||||||||| ||| | ||||||| ||||||||    |||||||||         |  | | ||||||||||    
T  12102043 ggtacatgctcataggcacccttgggactctccaccagctcccgggggcgcgaatgattatatatgttccacat---------gtatcgtagtaacatcg 12101953  T
Q  97 tcaactacatggttctccaactcctcccgcgatgtcggatgcgactgctccactctctcagaatgcacttcatcatgcaacc---gggaaacaatttcaa 193  Q
    ||| | |   ||||||||||||||||||||||||||| ||| |  |||||| ||||||||| |||||| ||||| ||||      |||||| ||||||||    
T  12101952 tcagccatggggttctccaactcctcccgcgatgtcgaatgtgtttgctccgctctctcaggatgcacgtcatcgtgcacaattggggaaataatttcaa 12101853  T
Q  194 acactggcgtagctagtagcagctcctcactagaaatgttgtcaaacacgttatgcagtggaaagccgaaagatgttgacgacaatga 281  Q
    ||||| | || ||| || | |||||||| |||||||| |||| |||||||||||| |||||||||| |||||||||||||||||||||    
T  12101852 acactcgtgttgcttgtggtagctcctcgctagaaatattgttaaacacgttatgtagtggaaagctgaaagatgttgacgacaatga 12101765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 3 - 170
Target Start/End: Original strand, 5781913 - 5782080
Alignment:
Q  3 tacatgctcatgggcacccttcggactctccaccagatcctgtgggcgcggatgattatgttccacatcatccgagagcgttggagtaacatcgtcaact 102  Q
    |||| ||||||||| |||||| |||||||||||||| ||| | |||  || |||||| |||||||||||||| || || ||   ||||||||| || ||     
T  5781913 tacacgctcatgggaacccttgggactctccaccagctcccgcgggatcgaatgattgtgttccacatcatcagaaagtgtaacagtaacatcatccacc 5782012  T
Q  103 acatggttctccaactcctcccgcgatgtcggatgcgactgctccactctctcagaatgcacttcatc 170  Q
       |||||||||||||||| |||||||||| ||||| |||||||| |||||||||||||||| |||||    
T  5782013 gtgtggttctccaactccttccgcgatgtctgatgcaactgctcctctctctcagaatgcacgtcatc 5782080  T

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Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 8 - 278
Target Start/End: Original strand, 19069436 - 19069709
Alignment:
Q  8 gctcatgggcacccttcggactctccaccagatcctgtgggcgcggatgattatgttccacatcatccgagagcgttggagtaacatcgtcaactacatg 107  Q
    ||||||||  |||||| |||||||||||||| ||||| |||  || |||||| |||||||||||||  || || ||   ||||||||| || ||     |    
T  19069436 gctcatggaaacccttgggactctccaccagctcctgcgggatcgaatgattgtgttccacatcattagaaagggtaacagtaacatcttccaccgtggg 19069535  T
Q  108 gttctccaactcctcccgcgatgtcggatgcgactgctccactctctcagaatgcacttcatcat--gcaac-cgggaaacaatttcaaacactggcgta 204  Q
    ||||||||||||||| ||||||||| ||||| || ||||| |||||||||||||||| ||||| |  |||||  |||||| ||  || ||||||||||||    
T  19069536 gttctccaactcctctcgcgatgtctgatgcaaccgctcctctctctcagaatgcacgtcatcgtgcgcaacaggggaaataacctctaacactggcgta 19069635  T
Q  205 gctagtagcagctcctcactagaaatgttgtcaaacacgttatgcagtggaaagccgaaagatgttgacgacaa 278  Q
    ||  || ||||||||| |  |||||| ||||||||| | || || | |||||||| ||||||  ||||||||||    
T  19069636 gcacgtggcagctccttaggagaaattttgtcaaacgcattgtgtaatggaaagctgaaagagtttgacgacaa 19069709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 164
Target Start/End: Complemental strand, 11724758 - 11724701
Alignment:
Q  107 ggttctccaactcctcccgcgatgtcggatgcgactgctccactctctcagaatgcac 164  Q
    ||||||||||| |||||||||||||| ||||| | |||||  |||||| |||||||||    
T  11724758 ggttctccaacacctcccgcgatgtcagatgcaattgctctgctctcttagaatgcac 11724701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 7e-18; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 18 - 164
Target Start/End: Complemental strand, 16311778 - 16311632
Alignment:
Q  18 acccttcggactctccaccagatcctgtgggcgcggatgattatgttccacatcatccgagagcgttggagtaacatcgtcaactacatggttctccaac 117  Q
    |||||| |||||||||||||| ||| ||||||||| | |||||| |||||||||||| || |||||   ||  ||||| || || ||  |||||||||||    
T  16311778 acccttgggactctccaccagctcccgtgggcgcgaacgattatattccacatcatcagaaagcgtaacagagacatcatccaccacggggttctccaac 16311679  T
Q  118 tcctcccgcgatgtcggatgcgactgctccactctctcagaatgcac 164  Q
     |||||||||||||| ||||| | || |||||| ||||| |||||||    
T  16311678 acctcccgcgatgtcagatgcaattgttccactttctcaaaatgcac 16311632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 18 - 164
Target Start/End: Complemental strand, 18488562 - 18488416
Alignment:
Q  18 acccttcggactctccaccagatcctgtgggcgcggatgattatgttccacatcatccgagagcgttggagtaacatcgtcaactacatggttctccaac 117  Q
    |||||| |||||||||||||| ||| ||||||||| | |||||| |||||||||||| || |||||   ||  ||||| || || ||  |||||||||||    
T  18488562 acccttgggactctccaccagctcccgtgggcgcgaacgattatattccacatcatcagaaagcgtaacagagacatcatccaccacggggttctccaac 18488463  T
Q  118 tcctcccgcgatgtcggatgcgactgctccactctctcagaatgcac 164  Q
     |||||||||||||| ||||| | || |||||| ||||| |||||||    
T  18488462 acctcccgcgatgtcagatgcaattgttccactttctcaaaatgcac 18488416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 18 - 164
Target Start/End: Complemental strand, 18492772 - 18492626
Alignment:
Q  18 acccttcggactctccaccagatcctgtgggcgcggatgattatgttccacatcatccgagagcgttggagtaacatcgtcaactacatggttctccaac 117  Q
    |||||| |||||||||||||| ||| ||||||||| | |||||| |||||||||||| || |||||   ||  ||||| || || ||  |||||||||||    
T  18492772 acccttgggactctccaccagctcccgtgggcgcgaacgattatattccacatcatcagaaagcgtaacagagacatcatccaccacggggttctccaac 18492673  T
Q  118 tcctcccgcgatgtcggatgcgactgctccactctctcagaatgcac 164  Q
     |||||||||||||| ||||| | || |||||| ||||| |||||||    
T  18492672 acctcccgcgatgtcagatgcaattgttccactttctcaaaatgcac 18492626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 175
Target Start/End: Original strand, 19829018 - 19829181
Alignment:
Q  12 atgggcacccttcggactctccaccagatcctgtgggcgcggatgattatgttccacatcatccgagagcgttggagtaacatcgtcaactacatggttc 111  Q
    ||||| |||||| |||||||||||||| ||| | |||  || |||||| |||||||||||||| || || ||   |||||||||||  |||    |||||    
T  19829018 atgggaacccttgggactctccaccagctcccgcgggttcgaatgattgtgttccacatcatcagaaagtgtaacagtaacatcgttcactgtggggttc 19829117  T
Q  112 tccaactcctcccgcgatgtcggatgcgactgctccactctctcagaatgcacttcatcatgca 175  Q
    ||||||||| || | |||||| | ||| || ||||| |||||||||||||||| ||||| ||||    
T  19829118 tccaactccccctgtgatgtctggtgcaaccgctcctctctctcagaatgcacgtcatcgtgca 19829181  T

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Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 26 - 164
Target Start/End: Complemental strand, 16314161 - 16314023
Alignment:
Q  26 gactctccaccagatcctgtgggcgcggatgattatgttccacatcatccgagagcgttggagtaacatcgtcaactacatggttctccaactcctcccg 125  Q
    ||||||||||||| ||| ||||||||| | |||||| |||||||||||| || |||||   ||  ||||| || || ||  ||||||||||| |||||||    
T  16314161 gactctccaccagctcccgtgggcgcgaacgattatattccacatcatcagaaagcgtaacagagacatcatccaccacggggttctccaacacctcccg 16314062  T
Q  126 cgatgtcggatgcgactgctccactctctcagaatgcac 164  Q
     |||||| ||||| | || |||||| ||||| |||||||    
T  16314061 tgatgtcagatgcaattgttccactttctcaaaatgcac 16314023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 26 - 164
Target Start/End: Complemental strand, 18495155 - 18495017
Alignment:
Q  26 gactctccaccagatcctgtgggcgcggatgattatgttccacatcatccgagagcgttggagtaacatcgtcaactacatggttctccaactcctcccg 125  Q
    ||||||||||||| ||| ||||||||| | |||||| |||||||||||| || |||||   ||  ||||| || || ||  ||||||||||| |||||||    
T  18495155 gactctccaccagctcccgtgggcgcgaacgattatattccacatcatcagaaagcgtaacagagacatcatccaccacggggttctccaacacctcccg 18495056  T
Q  126 cgatgtcggatgcgactgctccactctctcagaatgcac 164  Q
     |||||| ||||| | || |||||| ||||| |||||||    
T  18495055 tgatgtcagatgcaattgttccactttctcaaaatgcac 18495017  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 8 - 164
Target Start/End: Complemental strand, 17459587 - 17459431
Alignment:
Q  8 gctcatgggcacccttcggactctccaccagatcctgtgggcgcggatgattatgttccacatcatccgagagcgttggagtaacatcgtcaactacatg 107  Q
    ||||||||| ||| ||  ||||||||||||  ||| | |||| || |||||| |||||||||||||  || |||||   ||| |||||||| ||||   |    
T  17459587 gctcatggggaccgttgagactctccaccatctcccgcgggctcgaatgattgtgttccacatcattagaaagcgtaacagtgacatcgtccactatggg 17459488  T
Q  108 gttctccaactcctcccgcgatgtcggatgcgactgctccactctctcagaatgcac 164  Q
    |||||||||||  |||||||||||||||||| | |||||  ||||||| ||||||||    
T  17459487 gttctccaacttttcccgcgatgtcggatgcaattgctctgctctctcggaatgcac 17459431  T

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