View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10954A_low_2 (Length: 624)
Name: NF10954A_low_2
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 545; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 545; E-Value: 0
Query Start/End: Original strand, 19 - 615
Target Start/End: Original strand, 37821240 - 37821846
Alignment:
| Q |
19 |
gaaatgataggagaccaatgacaccaaaaatttaaaactttgtagagtggttagtggaatgcccactaagtggacttttatatacgagtactacggaaga |
118 |
Q |
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| T |
37821240 |
gaaatgataggagaccaatgacaccaaaaatttaaaactttgtagagtggttagtggaatggccactaagtggacttttatatacgagtactacggaaga |
37821339 |
T |
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| Q |
119 |
aattgtgaggccagcagtcacatcacattaccatgagttttggaattgctcttaacatatatcattaataaaatgctatagttatgtatgat-------- |
210 |
Q |
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| T |
37821340 |
aattgtgaggccagcagtcacatcacattaccatgagttttggaattgctcttaacatat--cattattaaaatgctatagttatgtatgataaagggtg |
37821437 |
T |
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| Q |
211 |
----aattatatatgtaagagatgaatagtattacagtatcaaccgttaaaaaacattacattatcaaaataataatcaaataaagaacagtactatggc |
306 |
Q |
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| T |
37821438 |
tgataattatatatgtaagagatgaatagtattacagtatcaaccgttaaaaaacattacattatcaaaataataatcaaataaagaacagtactatggc |
37821537 |
T |
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| Q |
307 |
cagttttggccagtattatagcacatgctaaatcaccaactgaactaaattgacacgcagtaactaggtacagacagatagttgttgtataacatgcata |
406 |
Q |
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| T |
37821538 |
cagttttggccagtattatagcacatgctaaatcaccaactgaactaaattgacacgcagtaactaggtacagacagatagttgttgtataacatgcata |
37821637 |
T |
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| Q |
407 |
atgtcagtctcaagtgcacagaagttaagatgcaacaccaattcaacgacatcttcacacaatcaattgcacattttataatgcagccccagatcaaata |
506 |
Q |
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| T |
37821638 |
atgtcagtctcaagtgcacagaagttaagatgcaacaccaattcaacgacatcttcacacaatcaattgcacattttataatgcagccccagatcaaata |
37821737 |
T |
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| Q |
507 |
atttaaacttgcctgcaaaattaaagctacagatatagaaaatcttaatacaaggttgggtatagaatcttgttaagtcctggaatctttacataacttc |
606 |
Q |
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| T |
37821738 |
atttaaacttgcctgcaaaattaaagctacagatatagaaaatcttaatacaaggttgggtatagaatcttgttaagtcctggaatctttacataacttc |
37821837 |
T |
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| Q |
607 |
aatattctt |
615 |
Q |
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| T |
37821838 |
catattctt |
37821846 |
T |
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