View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10954A_low_20 (Length: 444)
Name: NF10954A_low_20
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_20 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 390; Significance: 0; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 4 - 432
Target Start/End: Complemental strand, 12287634 - 12287209
Alignment:
| Q |
4 |
tcacctcgaacaacaacatatgcatcctcagttacatgaatattttccccggatataaccgttatttctaatgtatgtgaggctacacccatcgtataga |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12287634 |
tcacctcgaacaacaacatatgcatcctcaattacatgaatattttccccggatataaccgttatttctaatgtatgtgaggctacacccatcgtataga |
12287535 |
T |
|
| Q |
104 |
atttaatagtgttgtgcacaaatgtgtgttagtactttaagaatgaatgtatattgctatgttcttcaatcttgttttgatggaattgaggtgttatgta |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12287534 |
atttaatagtgttgtgcacaaatgtgtgttagtactttaagaatgattgtatattgctatgttcttcaatcttgttttgatggaattgaggtgttatgta |
12287435 |
T |
|
| Q |
204 |
ataagttgtgtgaatatataataagcttaagtttagagattttgatttggaaagtgaggagaaagagggaaagaaagaaagagtgtaattggtttgtagt |
303 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| |||||| |
|
|
| T |
12287434 |
ataagttgtgtgaatatataataagcttaagtttagagattttgatttggaaagtgacgagaaagagggaaagaaag--agagtgtaattggtgtgtagt |
12287337 |
T |
|
| Q |
304 |
ttcagtgtatttgaaatttggtttgaaaaagcaaaatatacattttcgttgatgactttgactttgtataacttgcagcacaaaacaattccttggatat |
403 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12287336 |
ttcagtgtatttgaaatttggtttgaaaaagc-aaatatacgttttcgttgatgactttgactttgtataacttgcagcacaaaacaattccttggatat |
12287238 |
T |
|
| Q |
404 |
atccgctaatacgctgtttggttgatatt |
432 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
12287237 |
atccgctaatacgctgtttggttgatatt |
12287209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 4 - 381
Target Start/End: Complemental strand, 12267055 - 12266675
Alignment:
| Q |
4 |
tcacctcgaacaacaacatatgcatcctcagttacatgaatattttccccggatataaccgttatttctaatgtatgtgaggctacacccatcgtataga |
103 |
Q |
| |
|
||||||||||| ||||| |||||||| || ||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||| ||| ||| |
|
|
| T |
12267055 |
tcacctcgaacgacaacgtatgcatcttcggttacatgaatattttcgccggatataaccgtgatttctaatgtgcgtgaggctacacccatagtagaga |
12266956 |
T |
|
| Q |
104 |
atttaatagt-gttgtgcacaaatgtg--tgttag-tactttaagaatgaatgtatattgctatgttcttcaatcttgttttgatggaattgaggtgtta |
199 |
Q |
| |
|
||||||| | |||||| | ||| | |||||| | | |||||||||||| |||||| ||||| |||||| || || ||| |||||||||||||| |
|
|
| T |
12266955 |
atttaatgttagttgtgaataaaacttcctgttagctggtgtaagaatgaatggatattgttatgtccttcaagtttattgtgagtgaattgaggtgtta |
12266856 |
T |
|
| Q |
200 |
tgtaataagttgtgtgaatatataataagcttaagtttagagattttgatttggaaagtgaggagaaagagggaaagaaagaaagagtgtaattggtttg |
299 |
Q |
| |
|
||| ||||||||||| ||||||||||||||||||| || | ||||||||| |||||||||| |||||||||||| ||||| | |||||||||||||||| |
|
|
| T |
12266855 |
tgttataagttgtgtaaatatataataagcttaaggtttgggattttgatatggaaagtgatgagaaagagggagagaaa-tacgagtgtaattggtttg |
12266757 |
T |
|
| Q |
300 |
tagtttcagtgtatttgaaatttggtttgaaaaagcaaaatatacattttcgttgatgactttgactttgtataacttgcag |
381 |
Q |
| |
|
| |||||| |||| ||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| | |||||| |
|
|
| T |
12266756 |
tggtttcaatgtaattgaaatttggtttgaaaaagcaaaatatacgttttcgttgaagactttgactttgtattagttgcag |
12266675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 4 - 381
Target Start/End: Complemental strand, 12282781 - 12282401
Alignment:
| Q |
4 |
tcacctcgaacaacaacatatgcatcctcagttacatgaatattttccccggatataaccgttatttctaatgtatgtgaggctacacccatcgtataga |
103 |
Q |
| |
|
||||||||||| ||||| |||||||| || ||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||| ||| ||| |
|
|
| T |
12282781 |
tcacctcgaacgacaacgtatgcatcttcggttacatgaatattttcgccggatataaccgtgatttctaatgtgcgtgaggctacacccatagtagaga |
12282682 |
T |
|
| Q |
104 |
atttaatagt-gttgtgcacaaatgtg--tgttag-tactttaagaatgaatgtatattgctatgttcttcaatcttgttttgatggaattgaggtgtta |
199 |
Q |
| |
|
||||||| | |||||| | ||| | |||||| | | |||||||||||| |||||| ||||| |||||| || || ||| |||||||||||||| |
|
|
| T |
12282681 |
atttaatgttagttgtgaataaaacttcctgttagctggtgtaagaatgaatggatattgttatgtccttcaagtttattgtgagtgaattgaggtgtta |
12282582 |
T |
|
| Q |
200 |
tgtaataagttgtgtgaatatataataagcttaagtttagagattttgatttggaaagtgaggagaaagagggaaagaaagaaagagtgtaattggtttg |
299 |
Q |
| |
|
||| ||||||||||||||||||||||||| ||||| || | ||||||||| |||||||||| |||||||||||| ||||| | |||||||||||||||| |
|
|
| T |
12282581 |
tgttataagttgtgtgaatatataataaggttaaggtttgggattttgatatggaaagtgatgagaaagagggagagaaa-tacgagtgtaattggtttg |
12282483 |
T |
|
| Q |
300 |
tagtttcagtgtatttgaaatttggtttgaaaaagcaaaatatacattttcgttgatgactttgactttgtataacttgcag |
381 |
Q |
| |
|
| |||||| |||| ||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| | |||||| |
|
|
| T |
12282482 |
tggtttcaatgtaattgaaatttggtttgaaaaagcaaaatatacgttttcgttgaagactttgactttgtattagttgcag |
12282401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 4 - 83
Target Start/End: Complemental strand, 12256964 - 12256885
Alignment:
| Q |
4 |
tcacctcgaacaacaacatatgcatcctcagttacatgaatattttccccggatataaccgttatttctaatgtatgtga |
83 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||||||||||||||||| || ||||||||||| ||||||||||| ||||| |
|
|
| T |
12256964 |
tcacctcgaacaacaacgtatgcatcctccgttacatgaatattttcaccagatataaccgtaatttctaatgtttgtga |
12256885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 4 - 83
Target Start/End: Complemental strand, 12264356 - 12264277
Alignment:
| Q |
4 |
tcacctcgaacaacaacatatgcatcctcagttacatgaatattttccccggatataaccgttatttctaatgtatgtga |
83 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||||||||||||||||| || ||||||||||| ||||||||||| ||||| |
|
|
| T |
12264356 |
tcacctcgaacaacaacgtatgcatcctccgttacatgaatattttcaccagatataaccgtaatttctaatgtttgtga |
12264277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 4 - 83
Target Start/End: Complemental strand, 12270968 - 12270889
Alignment:
| Q |
4 |
tcacctcgaacaacaacatatgcatcctcagttacatgaatattttccccggatataaccgttatttctaatgtatgtga |
83 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||||||||||||||||| || ||||||| ||| ||||||||||| ||||| |
|
|
| T |
12270968 |
tcacctcgaacaacaacgtatgcatcctctgttacatgaatattttctccagatataatcgtaatttctaatgtttgtga |
12270889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 262 - 337
Target Start/End: Complemental strand, 12270734 - 12270659
Alignment:
| Q |
262 |
gagaaagagggaaagaaagaaagagtgtaattggtttgtagtttcagtgtatttgaaatttggtttgaaaaagcaa |
337 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||| || | |||| |||||||||| | || |||| |||||||| |
|
|
| T |
12270734 |
gagaaagaggggaagaaagaaagagtgtaattggttggttggttcaatgtatttgaattatgatttggaaaagcaa |
12270659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 262 - 337
Target Start/End: Complemental strand, 12256725 - 12256650
Alignment:
| Q |
262 |
gagaaagagggaaagaaagaaagagtgtaattggtttgtagtttcagtgtatttgaaatttggtttgaaaaagcaa |
337 |
Q |
| |
|
|||||| |||| ||||||||||| |||||||||||| || | |||| |||||||| | |||| ||||||||||||| |
|
|
| T |
12256725 |
gagaaaaaggggaagaaagaaagggtgtaattggttggttggttcaatgtatttggattttgatttgaaaaagcaa |
12256650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 262 - 337
Target Start/End: Complemental strand, 12264117 - 12264042
Alignment:
| Q |
262 |
gagaaagagggaaagaaagaaagagtgtaattggtttgtagtttcagtgtatttgaaatttggtttgaaaaagcaa |
337 |
Q |
| |
|
|||||| |||| ||||||||||| |||||||||||| || | |||| |||||||| | |||| ||||||||||||| |
|
|
| T |
12264117 |
gagaaaaaggggaagaaagaaagggtgtaattggttggttggttcaatgtatttggattttgatttgaaaaagcaa |
12264042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 62; Significance: 1e-26; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 214 - 315
Target Start/End: Complemental strand, 29197546 - 29197446
Alignment:
| Q |
214 |
tgaatatataataagcttaagtttagagattttgatttggaaagtgaggagaaagagggaaagaaagaaagagtgtaattggtttgtagtttcagtgtat |
313 |
Q |
| |
|
|||||||||| ||||||||||||| | | ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |||||| |
|
|
| T |
29197546 |
tgaatatatattaagcttaagttttggg-ttttgatatggaaagtggtgagaaagagggaaagaaagaaagagtgtaattggtttgttgtttcggtgtat |
29197448 |
T |
|
| Q |
314 |
tt |
315 |
Q |
| |
|
|| |
|
|
| T |
29197447 |
tt |
29197446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 4 - 158
Target Start/End: Complemental strand, 29197690 - 29197535
Alignment:
| Q |
4 |
tcacctcgaacaacaacatatgcatcctcagttacatgaatattttccccggatataaccgttatttctaatgtatgtgaggctacacccatcgtataga |
103 |
Q |
| |
|
||||||||||| ||||| |||||||||||||||| |||||||||||| |||| |||||| |||||||||||||| |||| |||| |||||| ||| | | |
|
|
| T |
29197690 |
tcacctcgaacgacaacgtatgcatcctcagttatatgaatattttcaccggttataactgttatttctaatgtgcgtgaagctatacccatagtagaaa |
29197591 |
T |
|
| Q |
104 |
atttaatagtgttgtgcacaaatgtgtgttagtacttt-aagaatgaatgtatatt |
158 |
Q |
| |
|
|||| || |||||||||||| ||||| ||||||| |||||||||| |||||| |
|
|
| T |
29197590 |
atttgatgttgttgtgcacaagaatgtgtgtgtactttaaagaatgaatatatatt |
29197535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 368 - 430
Target Start/End: Complemental strand, 29197413 - 29197351
Alignment:
| Q |
368 |
tgtataacttgcagcacaaaacaattccttggatatatccgctaatacgctgtttggttgata |
430 |
Q |
| |
|
||||| ||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
29197413 |
tgtattacttgcagcacaagacaattccgtggatatatccgctaatacgctgtttggttgata |
29197351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University