View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10954A_low_201 (Length: 299)

Name: NF10954A_low_201
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10954A_low_201
NF10954A_low_201
[»] chr3 (6 HSPs)
chr3 (1-298)||(19199131-19199429)
chr3 (61-271)||(6777837-6778048)
chr3 (70-286)||(1596237-1596454)
chr3 (70-286)||(34437781-34437997)
chr3 (10-57)||(34437674-34437721)
chr3 (186-275)||(21565966-21566054)
[»] chr1 (8 HSPs)
chr1 (65-288)||(43782700-43782924)
chr1 (70-286)||(48999827-49000044)
chr1 (65-286)||(45152677-45152899)
chr1 (146-286)||(40553596-40553736)
chr1 (61-298)||(3375894-3376131)
chr1 (146-275)||(33297214-33297343)
chr1 (5-57)||(45152954-45153005)
chr1 (9-59)||(3375795-3375845)
[»] scaffold0018 (1 HSPs)
scaffold0018 (65-298)||(180324-180558)
[»] chr7 (3 HSPs)
chr7 (67-286)||(12627421-12627641)
chr7 (60-298)||(1326840-1327079)
chr7 (146-277)||(38457493-38457624)
[»] chr5 (9 HSPs)
chr5 (67-250)||(26653528-26653712)
chr5 (67-250)||(26925113-26925297)
chr5 (70-276)||(13274093-13274300)
chr5 (146-286)||(2742997-2743137)
chr5 (146-202)||(21101423-21101479)
chr5 (154-275)||(24209211-24209332)
chr5 (1-57)||(26653769-26653825)
chr5 (1-57)||(26925354-26925410)
chr5 (2-57)||(21101616-21101672)
[»] chr8 (3 HSPs)
chr8 (61-286)||(37227721-37227947)
chr8 (131-277)||(14096700-14096846)
chr8 (10-57)||(37227623-37227670)
[»] chr2 (4 HSPs)
chr2 (61-277)||(31116886-31117103)
chr2 (167-298)||(28035635-28035766)
chr2 (10-57)||(28035925-28035972)
chr2 (9-57)||(31116787-31116835)
[»] chr4 (11 HSPs)
chr4 (155-277)||(25147344-25147466)
chr4 (70-286)||(42705139-42705356)
chr4 (146-287)||(39465347-39465486)
chr4 (10-65)||(3681088-3681143)
chr4 (10-57)||(25147612-25147659)
chr4 (10-57)||(32305590-32305637)
chr4 (10-57)||(39465623-39465670)
chr4 (180-286)||(32307880-32307986)
chr4 (193-286)||(3680825-3680918)
chr4 (146-183)||(32305774-32305811)
chr4 (13-57)||(42705035-42705079)
[»] scaffold0251 (2 HSPs)
scaffold0251 (66-277)||(16977-17192)
scaffold0251 (10-57)||(16875-16922)
[»] scaffold0408 (1 HSPs)
scaffold0408 (131-277)||(7042-7188)
[»] chr6 (3 HSPs)
chr6 (146-286)||(6285814-6285954)
chr6 (133-250)||(35014337-35014454)
chr6 (185-275)||(2029728-2029818)
[»] scaffold0007 (1 HSPs)
scaffold0007 (146-217)||(257345-257416)
[»] scaffold0010 (1 HSPs)
scaffold0010 (177-275)||(32353-32451)


Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-115; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 1 - 298
Target Start/End: Complemental strand, 19199429 - 19199131
Alignment:
Q  1 tcaactgtgtagtcaggaatggacgcatggaggttcataataggatgtgatactctacaaaactagatcacccctctcctgctggctgagggcatgtaga 100  Q
    ||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| ||||||||    
T  19199429 tcaactgtgtagtcaggaatggacgcaggggggttcataataggatgtgatactctacaaaaatagatcacccctctcctactggctgaggacatgtaga 19199330  T
Q  101 g-aaactctgcgaaggccatagctacgtcccctgccgtaagaggcccaatgtctgtaggaggcctgggaatagtctagacatactcgtactgcctaataa 199  Q
    | ||||||||||||||||||| | |||||||||||||||||||||||||||| ||||||||||||||||| ||| | |||||||| ||||||||||| ||    
T  19199329 gcaaactctgcgaaggccataaccacgtcccctgccgtaagaggcccaatgtttgtaggaggcctgggaacagtttggacatactagtactgcctaagaa 19199230  T
Q  200 cccactatggcaagtgacataccctcttgtatttgccggccatgatccatctagagtactagcatatgtcctgaaaggacgtaatgtcttgttgtctct 298  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||  ||| |||||||||||| || |||||||||||||||| |||||||||    
T  19199229 cccactctggcaagtgacataccctcttgtatttgccggccatgatccatccggagcactagcatatgttctaaaaggacgtaatgtctcgttgtctct 19199131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 61 - 271
Target Start/End: Complemental strand, 6778048 - 6777837
Alignment:
Q  61 aactagatcacccctctcctgctggctgagggcatgtagag-aaactctgcgaaggccatagctacgtcccctgccgtaagaggcccaatgtctgtagga 159  Q
    |||| |||||||||||| ||| ||||||||| ||||||||| |||||| | |||||||   || |||||  |||||| || | || ||||||||||||||    
T  6778048 aactggatcacccctctgctgatggctgaggacatgtagagcaaactccgtgaaggcctgggccacgtcatctgccgcaataagctcaatgtctgtagga 6777949  T
Q  160 ggcctgggaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatctagagtact 259  Q
    | |||  ||||||||| ||||||| |||||||||||| ||||| || | |||||||||  ||| || |||  ||| |||||||||||||||  ||| ||     
T  6777948 gccctcagaatagtctggacatacccgtactgcctaagaaccctctctagcaagtgacggaccatcctgtcgttgtcggccatgatccatccggagcacc 6777849  T
Q  260 agcatatgtcct 271  Q
    ||||||||||||    
T  6777848 agcatatgtcct 6777837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 70 - 286
Target Start/End: Original strand, 1596237 - 1596454
Alignment:
Q  70 acccctctcctgctggctgagggcatgtagag-aaactctgcgaaggccatagctacgtcccctgccgtaagaggcccaatgtctgtaggaggcctggga 168  Q
    |||||||| ||| ||| ||||| ||||||||| ||||||   |||||||   || |||||  |||||| || | || ||||||||||||||| |||  ||    
T  1596237 acccctctgctgatgggtgaggacatgtagagcaaactccatgaaggcctgggccacgtcatctgccgcaataagctcaatgtctgtaggagccctcaga 1596336  T
Q  169 atagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatctagagtactagcatatgt 268  Q
    ||||||| |||||||  ||||||||||| ||||| || |||||||||||  ||| || |||   ||| ||||||||||||||  |||||| |||||||||    
T  1596337 atagtctggacatacctgtactgcctaagaacccgctttggcaagtgacggaccatcctgtcgctgctggccatgatccatccggagtaccagcatatgt 1596436  T
Q  269 cctgaaaggacgtaatgt 286  Q
    ||||||||| ||| ||||    
T  1596437 cctgaaagggcgtgatgt 1596454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 70 - 286
Target Start/End: Original strand, 34437781 - 34437997
Alignment:
Q  70 acccctctcctgctggctgagggcatgtagag-aaactctgcgaaggccatagctacgtcccctgccgtaagaggcccaatgtctgtaggaggcctggga 168  Q
    |||||| ||||| ||||||||| ||||||||| |||||| | |||| || | || |||||  | |||| || | || ||||||| ||||||| |||||||    
T  34437781 acccctatcctgatggctgaggacatgtagagcaaactccgtgaagacc-tggccacgtcatccgccgcaataagctcaatgtcagtaggagccctggga 34437879  T
Q  169 atagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatctagagtactagcatatgt 268  Q
    |||||||  |||||| |||||||||||| ||||| || ||| || ||||  ||| || ||    | ||| ||||||||||||  |||||| |||||||||    
T  34437880 atagtctgtacatacccgtactgcctaagaacccgctctggaaattgacggaccatcctgccactaccgaccatgatccatccggagtaccagcatatgt 34437979  T
Q  269 cctgaaaggacgtaatgt 286  Q
    ||||||||| ||| ||||    
T  34437980 cctgaaagggcgtgatgt 34437997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 57
Target Start/End: Original strand, 34437674 - 34437721
Alignment:
Q  10 tagtcaggaatggacgcatggaggttcataataggatgtgatactcta 57  Q
    ||||||||||||| |||| ||||||||| |||||||||||||||||||    
T  34437674 tagtcaggaatgggcgcagggaggttcacaataggatgtgatactcta 34437721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 275
Target Start/End: Complemental strand, 21566054 - 21565966
Alignment:
Q  186 gtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatctagagtactagcatatgtcctgaaa 275  Q
    ||||||||| | ||||| ||  ||||||||||| ||| |||| | |||| ||||||||||||||| ||||||| |||| | |||||||||    
T  21566054 gtactgcctcagaacccgctcgggcaagtgacacaccatcttttgtttgtcggccatgatccatccagagtac-agcacacgtcctgaaa 21565966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 121; Significance: 5e-62; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 65 - 288
Target Start/End: Original strand, 43782700 - 43782924
Alignment:
Q  65 agatcacccctctcctgctggctgagggcatgtagag-aaactctgcgaaggccatagctacgtcccctgccgtaagaggcccaatgtctgtaggaggcc 163  Q
    ||||||||||||||||||||||||||| ||||||||| ||||||   | |||||||||| ||||||| || || |||||||||||||||||||||||||     
T  43782700 agatcacccctctcctgctggctgaggacatgtagagcaaactccatggaggccatagccacgtcccttgacgcaagaggcccaatgtctgtaggaggca 43782799  T
Q  164 tgggaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatctagagtactagca 263  Q
    |||| ||||||| |||||||||||| ||||||| ||| | || |||||||||||| |||||| ||| ||||||| |||||||||||| ||||||||||||    
T  43782800 tgggtatagtctggacatactcgtattgcctaagaactcgctctggcaagtgacagaccctcatgtctttgccgaccatgatccatccagagtactagca 43782899  T
Q  264 tatgtcctgaaaggacgtaatgtct 288  Q
    |||||| ||||||| ||||||||||    
T  43782900 tatgtcgtgaaagggcgtaatgtct 43782924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 70 - 286
Target Start/End: Complemental strand, 49000044 - 48999827
Alignment:
Q  70 acccctctcctgctggctgagggcatgtagag-aaactctgcgaaggccatagctacgtcccctgccgtaagaggcccaatgtctgtaggaggcctggga 168  Q
    |||||| ||||| ||||||||| ||||||||| |||||| | |||||||  ||| |||||  | |||| || | || ||||||||||||||| |||||||    
T  49000044 acccctatcctgatggctgaggacatgtagagcaaactccgtgaaggcctgagccacgtcatccgccgcaataagctcaatgtctgtaggagccctggga 48999945  T
Q  169 atagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatctagagtactagcatatgt 268  Q
    ||||||||||||||| |||||||||||| ||||| || |||||||||||  ||| || |||  |||||||||||||||||||  |||||| |||||||||    
T  48999944 atagtctagacatacccgtactgcctaagaacccgctctggcaagtgacggaccatcctgtcgttgccggccatgatccatccggagtaccagcatatgt 48999845  T
Q  269 cctgaaaggacgtaatgt 286  Q
    ||||||||| ||| ||||    
T  48999844 cctgaaagggcgtgatgt 48999827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 65 - 286
Target Start/End: Complemental strand, 45152899 - 45152677
Alignment:
Q  65 agatcacccctctcctgctggctgagggcatgtagag-aaactctgcgaaggccatagctacgtcccctgccgtaagaggcccaatgtctgtaggaggcc 163  Q
    ||||||||| ||||| | ||||||||  ||||||||| ||||||   |||||||||||| || ||| ||| || |||||||||||||||||||||| |||    
T  45152899 agatcacccatctccagttggctgagaacatgtagagcaaactccatgaaggccatagccacatccgctgtcgcaagaggcccaatgtctgtaggatgcc 45152800  T
Q  164 tgggaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatctagagtactagca 263  Q
    | |||| ||||| ||||||| || ||||||||| ||||| || | |||||| |   |||| | ||| ||||||||||||||||||||| |||||| | ||    
T  45152799 taggaacagtctggacatacccgaactgcctaagaacccgctctagcaagtaatgaacccgcatgtctttgccggccatgatccatctggagtaccaaca 45152700  T
Q  264 tatgtcctgaaaggacgtaatgt 286  Q
    |||||||||||||| ||| ||||    
T  45152699 tatgtcctgaaagggcgtgatgt 45152677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 146 - 286
Target Start/End: Original strand, 40553596 - 40553736
Alignment:
Q  146 caatgtctgtaggaggcctgggaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgat 245  Q
    ||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||| || |||||||||||  ||| || |||   |||||||||||||    
T  40553596 caatgtctgtaggagccctgggaatagtctggacatactcgtactgcctaagaacccgctctggcaagtgacggaccatcctgtcgctgccggccatgat 40553695  T
Q  246 ccatctagagtactagcatatgtcctgaaaggacgtaatgt 286  Q
    |||||  |||||| |||||||||| ||||||| ||| ||||    
T  40553696 ccatccggagtaccagcatatgtcatgaaagggcgtgatgt 40553736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 61 - 298
Target Start/End: Original strand, 3375894 - 3376131
Alignment:
Q  61 aactagatcacccctctcctgctggctgagggcatgtagagaaa-ctctgcgaaggccatagctacgtcccctgccgtaagaggcccaatgtctgtagga 159  Q
    ||||||||||||| ||||||||||||||||| |||||||||||| |||   ||||| |||||| || ||| ||| |  |||||||||||| |||||||||    
T  3375894 aactagatcaccc-tctcctgctggctgaggacatgtagagaaaactccatgaaggtcatagccacctcctctggcacaagaggcccaatatctgtagga 3375992  T
Q  160 ggcctgggaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatctagagtact 259  Q
    |  ||||||  ||||| |||||||  ||| ||||||| ||||| || |||||||||||  ||| || ||| | | ||||||||||||||||  ||||||     
T  3375993 gctctgggaccagtctggacatacatgtattgcctaagaacccgctctggcaagtgacggaccatcctgtctctaccggccatgatccatccggagtacc 3376092  T
Q  260 agcatatgtcctgaaaggacgtaatgtcttgttgtctct 298  Q
    |  ||||||||||||||| ||  |||||| || ||||||    
T  3376093 aaaatatgtcctgaaagggcgccatgtctcgtcgtctct 3376131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 146 - 275
Target Start/End: Original strand, 33297214 - 33297343
Alignment:
Q  146 caatgtctgtaggaggcctgggaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgat 245  Q
    ||||||||||||||| |||||||||||||| | ||||| |||||||||||| ||||| || |||||||||||  ||| || |||   || ||||||||||    
T  33297214 caatgtctgtaggagccctgggaatagtctggtcatacccgtactgcctaagaacccgctctggcaagtgacggaccatcctgtcgctgtcggccatgat 33297313  T
Q  246 ccatctagagtactagcatatgtcctgaaa 275  Q
    |||||  |||||| ||||||||||||||||    
T  33297314 ccatccggagtaccagcatatgtcctgaaa 33297343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 57
Target Start/End: Complemental strand, 45153005 - 45152954
Alignment:
Q  5 ctgtgtagtcaggaatggacgcatggaggttcataataggatgtgatactcta 57  Q
    |||||||||||||||||| |||| || |||||| |||||||||||||||||||    
T  45153005 ctgtgtagtcaggaatggccgcaggg-ggttcacaataggatgtgatactcta 45152954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 59
Target Start/End: Original strand, 3375795 - 3375845
Alignment:
Q  9 gtagtcaggaatggacgcatggaggttcataataggatgtgatactctaca 59  Q
    |||||||||||||| |||| || |||||| ||||||||||| |||||||||    
T  3375795 gtagtcaggaatggccgcaggggggttcacaataggatgtgctactctaca 3375845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 119; Significance: 8e-61; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 65 - 298
Target Start/End: Original strand, 180324 - 180558
Alignment:
Q  65 agatcacccctctcctgctggctgagggcatgtagag-aaactctgcgaaggccatagctacgtcccctgccgtaagaggcccaatgtctgtaggaggcc 163  Q
    ||||||||||||||||||||||||||| ||||||||| ||||||   ||||| |||||| | ||||||||||  |||||||||||||| |||||||||||    
T  180324 agatcacccctctcctgctggctgaggacatgtagagcaaactccatgaaggtcatagccatgtcccctgccacaagaggcccaatgtttgtaggaggcc 180423  T
Q  164 tgggaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatctagagtactagca 263  Q
    |||||| ||||||||||||| |||||||||||| ||||| || |||||||||||| |||||| ||| |||| |||||||||||||||  |||||| | ||    
T  180424 tgggaacagtctagacatacccgtactgcctaagaacccgctctggcaagtgacagaccctcctgtctttggcggccatgatccatccggagtaccaaca 180523  T
Q  264 tatgtcctgaaaggacgtaatgtcttgttgtctct 298  Q
    |||||||||||||| | |||||||| || ||||||    
T  180524 tatgtcctgaaagggcataatgtctcgtcgtctct 180558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 81; Significance: 4e-38; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 67 - 286
Target Start/End: Complemental strand, 12627641 - 12627421
Alignment:
Q  67 atcacccctctcctgctggctgagggcatgtagagaaa-ctctgcgaaggccatagctacgtcccctgccgtaagaggcccaatgtctgtaggaggcctg 165  Q
    |||||||||||  || ||||||||| |||||||||||| |||   |||||||||||| ||  || ||| || || || ||||||||||||||||||||||    
T  12627641 atcacccctctgttgttggctgaggacatgtagagaaaactccatgaaggccatagccaccgcctctggcgcaacagtcccaatgtctgtaggaggcctg 12627542  T
Q  166 ggaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatctagagtactagcata 265  Q
    |||| ||||| | |||||  ||||||| ||| |||||||| |||||||||||  ||| || ||| |||||||||||||||||||||||||||| | ||||    
T  12627541 ggaacagtctgggcatacctgtactgcataagaacccactctggcaagtgacgaaccatcctgtctttgccggccatgatccatctagagtaccaccata 12627442  T
Q  266 tgtcctgaaaggacgtaatgt 286  Q
    |||||| ||||| ||| ||||    
T  12627441 tgtcctaaaagggcgtcatgt 12627421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 60 - 298
Target Start/End: Original strand, 1326840 - 1327079
Alignment:
Q  60 aaactagatcacccctctcctgctggctgagggcatgtagag-aaactctgcgaaggccatagctacgtcccctgccgtaagaggcccaatgtctgtagg 158  Q
    |||| ||||||||||||||||| ||||||||| ||||||||| ||||||   ||||||| || | || ||||||| ||  ||||||||||||||||||||    
T  1326840 aaaccagatcacccctctcctgttggctgaggacatgtagagcaaactccatgaaggccgtaaccacctcccctggcgccagaggcccaatgtctgtagg 1326939  T
Q  159 aggcctgggaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatctagagtac 258  Q
    |||| || ||| | | | ||||||| | |||||||||| | |||  | |||||||||||  |||||||||| | ||| ||||||||||||||  ||||||    
T  1326940 aggcatgtgaacaatttggacatacccatactgcctaaaatcccgttctggcaagtgacggaccctcttgtctctgcaggccatgatccatccggagtac 1327039  T
Q  259 tagcatatgtcctgaaaggacgtaatgtcttgttgtctct 298  Q
     | ||||||||||||||||  ||||||||| || ||||||    
T  1327040 caacatatgtcctgaaagggtgtaatgtctcgtcgtctct 1327079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 146 - 277
Target Start/End: Complemental strand, 38457624 - 38457493
Alignment:
Q  146 caatgtctgtaggaggcctgggaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgat 245  Q
    |||||||||||||||  |||||||||||||  | |||| |||||||||||| |||| ||| |||||||||||  ||| || |||   |||||||||||||    
T  38457624 caatgtctgtaggagcgctgggaatagtctgaatatacccgtactgcctaagaaccaactctggcaagtgacggaccatcatgtcgctgccggccatgat 38457525  T
Q  246 ccatctagagtactagcatatgtcctgaaagg 277  Q
    |||||  |||||| ||||||||||||||||||    
T  38457524 ccatccggagtaccagcatatgtcctgaaagg 38457493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 69; Significance: 5e-31; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 67 - 250
Target Start/End: Complemental strand, 26653712 - 26653528
Alignment:
Q  67 atcacccctctcctgctggctgagggcatgtagag-aaactctgcgaaggccatagctacgtcccctgccgtaagaggcccaatgtctgtaggaggcctg 165  Q
    ||||||||||||||||||| ||||| ||||||||| ||||||    |||| ||| || |||||  || | | |||||||||||||| ||||| ||| |||    
T  26653712 atcacccctctcctgctggttgaggacatgtagagcaaactccatcaaggtcattgccacgtcatctactgcaagaggcccaatgtatgtagaaggtctg 26653613  T
Q  166 ggaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatc 250  Q
    |||||||||| ||||||| |||||||||||| |||||  | |||||||||||| ||||||| ||  |||||||||||||||||||    
T  26653612 ggaatagtctggacatacccgtactgcctaagaacccgttctggcaagtgacagaccctctagtcattgccggccatgatccatc 26653528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 67 - 250
Target Start/End: Complemental strand, 26925297 - 26925113
Alignment:
Q  67 atcacccctctcctgctggctgagggcatgtagag-aaactctgcgaaggccatagctacgtcccctgccgtaagaggcccaatgtctgtaggaggcctg 165  Q
    ||||||||||||||||||| ||||| ||||||||| ||||||    |||| ||| || |||||  || | | |||||||||||||| ||||| ||| |||    
T  26925297 atcacccctctcctgctggttgaggacatgtagagcaaactccatcaaggtcattgccacgtcatctactgcaagaggcccaatgtatgtagaaggtctg 26925198  T
Q  166 ggaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatc 250  Q
    |||||||||| ||||||| |||||||||||| |||||  | |||||||||||| ||||||| ||  |||||||||||||||||||    
T  26925197 ggaatagtctggacatacccgtactgcctaagaacccgttctggcaagtgacagaccctctagtcattgccggccatgatccatc 26925113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 70 - 276
Target Start/End: Complemental strand, 13274300 - 13274093
Alignment:
Q  70 acccctctcctgctggctgagggcatgtagagaaa-ctctgcgaaggccatagctacgtcccctgccgtaagaggcccaatgtctgtaggaggcctggga 168  Q
    |||||| ||||| ||||||||| |||||||||||| ||||| |||||||   || |||||  |  ||| || | || ||||| ||||||||| |||||||    
T  13274300 acccctatcctgatggctgaggacatgtagagaaaactctgtgaaggcctaggccacgtcatccaccgcaataagctcaatggctgtaggagccctggga 13274201  T
Q  169 atagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatctagagtactagcatatgt 268  Q
    ||||||| ||||||| |||||||||||| ||||| || |||||||||||  ||  || |||   ||||||||||||||||||| |||||| |||||||||    
T  13274200 atagtctggacatacccgtactgcctaagaacccgctctggcaagtgacggacaatcctgtcgctgccggccatgatccatctggagtaccagcatatgt 13274101  T
Q  269 cctgaaag 276  Q
    ||| ||||    
T  13274100 cctaaaag 13274093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 146 - 286
Target Start/End: Complemental strand, 2743137 - 2742997
Alignment:
Q  146 caatgtctgtaggaggcctgggaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgat 245  Q
    ||||||||||||||| |||| ||||||| | ||||||| |||||| ||||| ||||| || || |||||||   ||| || |||   |||||| ||||||    
T  2743137 caatgtctgtaggagccctgagaatagtttggacatacccgtacttcctaagaacccgctctgacaagtgatggaccatcctgtcgctgccggtcatgat 2743038  T
Q  246 ccatctagagtactagcatatgtcctgaaaggacgtaatgt 286  Q
    |||||  |||||| |||||||||||||||||| ||| ||||    
T  2743037 ccatccggagtaccagcatatgtcctgaaagggcgtgatgt 2742997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 146 - 202
Target Start/End: Complemental strand, 21101479 - 21101423
Alignment:
Q  146 caatgtctgtaggaggcctgggaatagtctagacatactcgtactgcctaataaccc 202  Q
    ||||||||||||||| ||| |||||||||| ||||||| |||||||||||| |||||    
T  21101479 caatgtctgtaggagccctaggaatagtctggacatacacgtactgcctaagaaccc 21101423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 154 - 275
Target Start/End: Original strand, 24209211 - 24209332
Alignment:
Q  154 gtaggaggcctgggaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatctag 253  Q
    |||||||| ||| |||| |||||| |||| ||||||||||| | ||||| || |||||||||||    | || ||| |||| ||| |||||||||||  |    
T  24209211 gtaggaggtctgtgaatggtctaggcatagtcgtactgcctcagaacccgctctggcaagtgacggcacatcctgtctttgtcggtcatgatccatccgg 24209310  T
Q  254 agtactagcatatgtcctgaaa 275  Q
    ||||| ||||||||||| ||||    
T  24209311 agtaccagcatatgtcccgaaa 24209332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 26653825 - 26653769
Alignment:
Q  1 tcaactgtgtagtcaggaatggacgcatggaggttcataataggatgtgatactcta 57  Q
    ||||||||||||||||||||||   || || |||||| |||||||||||||||||||    
T  26653825 tcaactgtgtagtcaggaatggctacaggggggttcacaataggatgtgatactcta 26653769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 26925410 - 26925354
Alignment:
Q  1 tcaactgtgtagtcaggaatggacgcatggaggttcataataggatgtgatactcta 57  Q
    ||||||||||||||||||||||   || || |||||| |||||||||||||||||||    
T  26925410 tcaactgtgtagtcaggaatggctacaggggggttcacaataggatgtgatactcta 26925354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 57
Target Start/End: Complemental strand, 21101672 - 21101616
Alignment:
Q  2 caactgtgtagtcaggaatggacgc-atggaggttcataataggatgtgatactcta 57  Q
    ||||||||||||||||||||| ||| | || |||||| ||||||||| |||||||||    
T  21101672 caactgtgtagtcaggaatggccgcaaggggggttcacaataggatgcgatactcta 21101616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 61 - 286
Target Start/End: Original strand, 37227721 - 37227947
Alignment:
Q  61 aactagatcacccctctcctgctggctgagggcatgtagag-aaactctgcgaaggccatagctacgtcccctgccgtaagaggcccaatgtctgtagga 159  Q
    |||| ||| |||||| || || ||||||||| ||||||||| |||||| | |||||||   || |||||  | |||| || | || ||||||||||||||    
T  37227721 aactggatgacccctatcttgatggctgaggacatgtagagcaaactccgtgaaggcctgggccacgtcatccgccgcaataagctcaatgtctgtagga 37227820  T
Q  160 ggcctgggaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatctagagtact 259  Q
    | |||||||||||||| ||||||| |||||||||||| ||||| || ||||||||||   ||| || |||   || |||||||||||||||  |||||||    
T  37227821 gccctgggaatagtctggacatacccgtactgcctaagaacccgctctggcaagtgagggaccatcctgtcgatgtcggccatgatccatccggagtact 37227920  T
Q  260 agcatatgtcctgaaaggacgtaatgt 286  Q
    |||||||||||| ||||| ||| ||||    
T  37227921 agcatatgtcctaaaagggcgtgatgt 37227947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 131 - 277
Target Start/End: Complemental strand, 14096846 - 14096700
Alignment:
Q  131 ctgccgtaagaggcccaatgtctgtaggaggcctgggaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgta 230  Q
    |||||| |||| || |||||||||||||||||  ||||||||||| |||||||  ||||||||||| || || || |||||||||||  ||| |  |||     
T  14096846 ctgccgcaagaagctcaatgtctgtaggaggcaagggaatagtctggacatacctgtactgcctaagaaaccgctctggcaagtgacggaccattatgtc 14096747  T
Q  231 tttgccggccatgatccatctagagtactagcatatgtcctgaaagg 277  Q
      || |||||||||||||||| |||||||||| ||||||||||||||    
T  14096746 gctgtcggccatgatccatctggagtactagcttatgtcctgaaagg 14096700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 10 - 57
Target Start/End: Original strand, 37227623 - 37227670
Alignment:
Q  10 tagtcaggaatggacgcatggaggttcataataggatgtgatactcta 57  Q
    ||||||||||||| |||| || |||||| |||||||||||||||||||    
T  37227623 tagtcaggaatggccgcaggggggttcacaataggatgtgatactcta 37227670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 8e-27; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 61 - 277
Target Start/End: Original strand, 31116886 - 31117103
Alignment:
Q  61 aactagatcacccctctcctgctggctgagggcatgtagag-aaactctgcgaaggccatagctacgtcccctgccgtaagaggcccaatgtctgtagga 159  Q
    |||| ||| |||||||| ||| ||||||||| ||||||||| |||||||  ||||| |   || |||||  ||||||||||||||  |||||||||||||    
T  31116886 aactggataacccctctgctgatggctgaggacatgtagagcaaactctatgaaggtctgggccacgtcatctgccgtaagaggcttaatgtctgtagga 31116985  T
Q  160 ggcctgggaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatctagagtact 259  Q
    ||||||||    |||| ||||||| |||||||||||| |||| ||| |||||||||||| ||| || | | | || |||||||||||||||   |||||     
T  31116986 ggcctgggccgtgtctggacatacccgtactgcctaagaaccgactctggcaagtgacagaccatcctatctctgtcggccatgatccatccgaagtacc 31117085  T
Q  260 agcatatgtcctgaaagg 277  Q
    ||||||| ||||||||||    
T  31117086 agcatatatcctgaaagg 31117103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 167 - 298
Target Start/End: Complemental strand, 28035766 - 28035635
Alignment:
Q  167 gaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatctagagtactagcatat 266  Q
    ||||||||| ||||||| | |||||||||| ||||| || | |||||||||  ||| || |||   |||||||||||||| |||  |||||| |||||||    
T  28035766 gaatagtctggacatacccctactgcctaagaacccgctctagcaagtgacggaccatcatgtcgctgccggccatgatctatccggagtaccagcatat 28035667  T
Q  267 gtcctgaaaggacgtaatgtcttgttgtctct 298  Q
    ||| ||||||| ||| |||| |||| ||||||    
T  28035666 gtcttgaaagggcgtgatgtgttgtcgtctct 28035635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 57
Target Start/End: Complemental strand, 28035972 - 28035925
Alignment:
Q  10 tagtcaggaatggacgcatggaggttcataataggatgtgatactcta 57  Q
    ||||||||||||| ||||||| |||||| |||||||||||||||||||    
T  28035972 tagtcaggaatggccgcatgggggttcacaataggatgtgatactcta 28035925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 57
Target Start/End: Original strand, 31116787 - 31116835
Alignment:
Q  9 gtagtcaggaatggacgcatggaggttcataataggatgtgatactcta 57  Q
    |||||||||||||| |||| || |||||| |||||||||||||||||||    
T  31116787 gtagtcaggaatggccgcaggggggttcacaataggatgtgatactcta 31116835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 5e-25; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 155 - 277
Target Start/End: Complemental strand, 25147466 - 25147344
Alignment:
Q  155 taggaggcctgggaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatctaga 254  Q
    |||||| | |||||||||||| ||||||| |||||||||||| ||||| || |||||||||||| ||| || |||   ||||||||||||||||||  ||    
T  25147466 taggagccatgggaatagtctggacatacccgtactgcctaagaacccgctctggcaagtgacagaccatcctgtcgctgccggccatgatccatccgga 25147367  T
Q  255 gtactagcatatgtcctgaaagg 277  Q
    |||| ||||||||||||||||||    
T  25147366 gtaccagcatatgtcctgaaagg 25147344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 70 - 286
Target Start/End: Original strand, 42705139 - 42705356
Alignment:
Q  70 acccctctcctgctggctgagggcatgtagag-aaactctgcgaaggccatagctacgtcccctgccgtaagaggcccaatgtctgtaggaggcctggga 168  Q
    |||||||| ||| ||||||||| ||||||||| |||||| | |||||||   || |||||  ||| || || | || ||||||||||||||| |||||||    
T  42705139 acccctctgctgatggctgaggacatgtagagcaaactccgtgaaggcctgggccacgtcatctgtcgcaataagctcaatgtctgtaggagccctggga 42705238  T
Q  169 atagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatctagagtactagcatatgt 268  Q
    ||||| | ||||| | |||||||||||| ||||| || |||||||||||  ||| || |||   ||||| ||||||||||||  |||||| | |||||||    
T  42705239 atagtatggacatgcccgtactgcctaagaacccgctctggcaagtgacggaccttcatgtcgctgccgcccatgatccatccggagtaccaacatatgt 42705338  T
Q  269 cctgaaaggacgtaatgt 286  Q
    ||||||||| ||| ||||    
T  42705339 cctgaaagggcgtgatgt 42705356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 146 - 287
Target Start/End: Complemental strand, 39465486 - 39465347
Alignment:
Q  146 caatgtctgtaggaggcctgggaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgat 245  Q
    |||||||||||| || |||| ||||||||  ||||||| | |||||||||| ||||  || |||||||| ||  ||| || |||   |||||||||||||    
T  39465486 caatgtctgtagaagccctgagaatagtc--gacatacccatactgcctaagaaccggctctggcaagttacggaccatcctgtcgctgccggccatgat 39465389  T
Q  246 ccatctagagtactagcatatgtcctgaaaggacgtaatgtc 287  Q
    |||||  ||||||||||||||||||||||||| ||| |||||    
T  39465388 ccatccggagtactagcatatgtcctgaaagggcgtgatgtc 39465347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 10 - 65
Target Start/End: Complemental strand, 3681143 - 3681088
Alignment:
Q  10 tagtcaggaatggacgcatggaggttcataataggatgtgatactctacaaaacta 65  Q
    ||||||||||||| |||| || |||||||||||||||||||||||||| |||||||    
T  3681143 tagtcaggaatggtcgcaggggggttcataataggatgtgatactctaaaaaacta 3681088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 10 - 57
Target Start/End: Complemental strand, 25147659 - 25147612
Alignment:
Q  10 tagtcaggaatggacgcatggaggttcataataggatgtgatactcta 57  Q
    ||||||||||||| |||| || |||||| |||||||||||||||||||    
T  25147659 tagtcaggaatggccgcaggggggttcacaataggatgtgatactcta 25147612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 10 - 57
Target Start/End: Original strand, 32305590 - 32305637
Alignment:
Q  10 tagtcaggaatggacgcatggaggttcataataggatgtgatactcta 57  Q
    ||||||||||||| | ||||| |||||| |||||||||||||||||||    
T  32305590 tagtcaggaatggccacatgggggttcacaataggatgtgatactcta 32305637  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 10 - 57
Target Start/End: Complemental strand, 39465670 - 39465623
Alignment:
Q  10 tagtcaggaatggacgcatggaggttcataataggatgtgatactcta 57  Q
    ||||||||||||| |||| || |||||| |||||||||||||||||||    
T  39465670 tagtcaggaatggccgcaggggggttcacaataggatgtgatactcta 39465623  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 286
Target Start/End: Original strand, 32307880 - 32307986
Alignment:
Q  180 atactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatctagagtactagcatatgtcctgaaaggac 279  Q
    |||| |||||||||||| ||||| ||  ||||||||||  ||| || |||   || |||||||||||||||  |||||| |||||||||||| ||||| |    
T  32307880 atacccgtactgcctaagaacccgctcaggcaagtgacggaccatcctgtcgctgtcggccatgatccatccggagtaccagcatatgtcctcaaagggc 32307979  T
Q  280 gtaatgt 286  Q
    || ||||    
T  32307980 gtgatgt 32307986  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 286
Target Start/End: Complemental strand, 3680918 - 3680825
Alignment:
Q  193 ctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatctagagtactagcatatgtcctgaaaggacgtaatgt 286  Q
    |||| ||||| || |||||||||||  ||| ||||||   ||||||||||||||||||  ||||||||| || |||||| ||||| ||| ||||    
T  3680918 ctaagaacccgctctggcaagtgacggaccatcttgtcgctgccggccatgatccatccggagtactagtatgtgtcctcaaagggcgtgatgt 3680825  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 183
Target Start/End: Original strand, 32305774 - 32305811
Alignment:
Q  146 caatgtctgtaggaggcctgggaatagtctagacatac 183  Q
    ||||||||||||||| |||||||||||||| |||||||    
T  32305774 caatgtctgtaggagccctgggaatagtctggacatac 32305811  T

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Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 57
Target Start/End: Original strand, 42705035 - 42705079
Alignment:
Q  13 tcaggaatggacgcatggaggttcataataggatgtgatactcta 57  Q
    |||||||||| |||| || |||||| |||||||||||||||||||    
T  42705035 tcaggaatggccgcaggggggttcacaataggatgtgatactcta 42705079  T

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Target: scaffold0251 (Bit Score: 57; Significance: 8e-24; HSPs: 2)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 66 - 277
Target Start/End: Original strand, 16977 - 17192
Alignment:
Q  66 gatcacccctctcctgctggctgagggcatgtagag-aaactctgcgaaggcca--tag-ctacgtcccctgccgtaagaggcccaatgtctgtaggagg 161  Q
    |||||||||||| ||| ||||||||| ||||||||| |||||||| ||||| ||  ||| | | |||  |||||| || | ||  ||||||||||||||     
T  16977 gatcacccctctactgatggctgaggacatgtagagcaaactctgtgaagggcacctaggccatgtcatctgccgcaataagctaaatgtctgtaggagc 17076  T
Q  162 cctgggaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatctagagtactag 261  Q
    ||| |||||||||| ||||||| |||||| ||||| ||||| || ||| |||||||  ||| || |||   ||| |||||||||||||| ||||||| ||    
T  17077 cctcggaatagtctggacatacccgtactacctaacaacccgctctggaaagtgacggaccatcctgtcgctgctggccatgatccatccagagtaccag 17176  T
Q  262 catatgtcctgaaagg 277  Q
    ||||||||||||||||    
T  17177 catatgtcctgaaagg 17192  T

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Target: scaffold0251; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 10 - 57
Target Start/End: Original strand, 16875 - 16922
Alignment:
Q  10 tagtcaggaatggacgcatggaggttcataataggatgtgatactcta 57  Q
    ||||||||||||| |||| || |||||| |||||||||||||||||||    
T  16875 tagtcaggaatggccgcaggggggttcacaataggatgtgatactcta 16922  T

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Target: scaffold0408 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0408
Description:

Target: scaffold0408; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 131 - 277
Target Start/End: Complemental strand, 7188 - 7042
Alignment:
Q  131 ctgccgtaagaggcccaatgtctgtaggaggcctgggaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgta 230  Q
    |||||| |||| || |||||||||||||||||  ||||||||||| |||||||  ||||||||||| || || || |||||||||||  ||| |  |||     
T  7188 ctgccgcaagaagctcaatgtctgtaggaggcaagggaatagtctggacatacctgtactgcctaagaaaccgctctggcaagtgacggaccattatgtc 7089  T
Q  231 tttgccggccatgatccatctagagtactagcatatgtcctgaaagg 277  Q
      || |||||||||||||||| |||||||||| ||||||||||||||    
T  7088 gctgtcggccatgatccatctggagtactagcttatgtcctgaaagg 7042  T

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Target: chr6 (Bit Score: 49; Significance: 5e-19; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 146 - 286
Target Start/End: Original strand, 6285814 - 6285954
Alignment:
Q  146 caatgtctgtaggaggcctgggaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgat 245  Q
    |||||||| |||||| |||||||||||||| ||||||| |||||||||||| ||||| || || ||||||||  ||| || | |   |||  ||||||||    
T  6285814 caatgtctataggagccctgggaatagtctggacatacccgtactgcctaagaacccgctctgccaagtgacggaccatcctatcgctgctagccatgat 6285913  T
Q  246 ccatctagagtactagcatatgtcctgaaaggacgtaatgt 286  Q
    |||||| |||||| |||||||||||| ||||| ||| ||||    
T  6285914 ccatctggagtaccagcatatgtcctcaaagggcgtgatgt 6285954  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 133 - 250
Target Start/End: Complemental strand, 35014454 - 35014337
Alignment:
Q  133 gccgtaagaggcccaatgtctgtaggaggcctgggaatagtctagacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatt 232  Q
    ||||||| | || |||||| |||| ||| |||| ||||||||| ||||||| |||||||||||| ||||| || |||||||||||  ||| || |||  |    
T  35014454 gccgtaataagctcaatgtatgtacgagccctgtgaatagtctggacatacccgtactgcctaagaacccgctctggcaagtgacggaccatcctgtcgt 35014355  T
Q  233 tgccggccatgatccatc 250  Q
    ||||| ||||||||||||    
T  35014354 tgccgaccatgatccatc 35014337  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 185 - 275
Target Start/End: Complemental strand, 2029818 - 2029728
Alignment:
Q  185 cgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatctagagtactagcatatgtcctgaaa 275  Q
    |||||||||| | ||||| || |||||||||||  ||| |||| | |||||||||||||||||||| ||| ||| |||| | |||||||||    
T  2029818 cgtactgcctcagaacccgctctggcaagtgacgcaccatcttctgtttgccggccatgatccatccagaataccagcacacgtcctgaaa 2029728  T

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Target: scaffold0007 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 146 - 217
Target Start/End: Original strand, 257345 - 257416
Alignment:
Q  146 caatgtctgtaggaggcctgggaatagtctagacatactcgtactgcctaataacccactatggcaagtgac 217  Q
    |||||||||| |||| |||| ||||||||| ||||||| |||||| ||||| ||||| || |||||||||||    
T  257345 caatgtctgtgggagccctgagaatagtctggacatacccgtactacctaagaacccgctctggcaagtgac 257416  T

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Target: scaffold0010 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 177 - 275
Target Start/End: Original strand, 32353 - 32451
Alignment:
Q  177 gacatactcgtactgcctaataacccactatggcaagtgacataccctcttgtatttgccggccatgatccatctagagtactagcatatgtcctgaaa 275  Q
    |||||||  ||||| ||||| ||||| || |||||||||||  ||| || ||| | ||  ||||||||||||||| |||||| ||||||||||||||||    
T  32353 gacatacctgtactacctaagaacccgctctggcaagtgacggaccatcatgtctctgttggccatgatccatctggagtaccagcatatgtcctgaaa 32451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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