View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10954A_low_202 (Length: 299)
Name: NF10954A_low_202
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_202 |
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Alignment Details
Target: chr7 (Bit Score: 221; Significance: 1e-121; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 284
Target Start/End: Complemental strand, 16639894 - 16639616
Alignment:
| Q |
1 |
tcaacacttaaattggtgtgtaatacttggaagagatcaacactct-gacttctgagcctctcacaaaactggcattttacattttgattgagtaaactt |
99 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16639894 |
tcaacacttaaattggtgtgtaatacttggaagagatcaacactcttgacttctgagcctctcacaaaactggcattttacattttgattgagtaaactt |
16639795 |
T |
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| Q |
100 |
tgccactctgattgagtaaacttagtcaagcatgtagctaagaacgagtccttgtatttataaacttacagttcctgtttccatgaaatttctcttccaa |
199 |
Q |
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| T |
16639794 |
tgccact---act---ttcccttagtcaagcatgtagctaagaacgagtccttgtatttatgaacttacagttcctgtttccatgaaatttctcttccaa |
16639701 |
T |
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| Q |
200 |
gggcatatcttgaacggactggctcctgactctccttatagagtttgatacccattaaatgattccttttttaccttcaaccaat |
284 |
Q |
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| T |
16639700 |
gggcatatcttgaacctactggctcctgactctccttatagagtttgatacccattaaatgattccttttttaccttcaaccaat |
16639616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 284
Target Start/End: Original strand, 17455744 - 17456022
Alignment:
| Q |
1 |
tcaacacttaaattggtgtgtaatacttggaagagatcaacactct-gacttctgagcctctcacaaaactggcattttacattttgattgagtaaactt |
99 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17455744 |
tcaacacttaaattggtgtgtaatacttggaagagatcaacactcttgacttctgagcctctcacaaaactggcattttacattttgattgagtaaactt |
17455843 |
T |
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| Q |
100 |
tgccactctgattgagtaaacttagtcaagcatgtagctaagaacgagtccttgtatttataaacttacagttcctgtttccatgaaatttctcttccaa |
199 |
Q |
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| T |
17455844 |
tgccact---act---ttcccttagtcaagcatgtagctaagaacgagtccttgtatttatgaacttacagttcctgtttccatgaaatttctcttccaa |
17455937 |
T |
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| Q |
200 |
gggcatatcttgaacggactggctcctgactctccttatagagtttgatacccattaaatgattccttttttaccttcaaccaat |
284 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17455938 |
gggcatatcttgaacctactggctcctgactctccttatagagtttgatacccattaaatgattccttttttaccttcaaccaat |
17456022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 284
Target Start/End: Complemental strand, 17597470 - 17597192
Alignment:
| Q |
1 |
tcaacacttaaattggtgtgtaatacttggaagagatcaacactct-gacttctgagcctctcacaaaactggcattttacattttgattgagtaaactt |
99 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17597470 |
tcaacacttaaattggtgtgtaatacttggaagagatcaacactcttgacttctgagcctctcacaaaactggcattttacattttgattgagtaaactt |
17597371 |
T |
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| Q |
100 |
tgccactctgattgagtaaacttagtcaagcatgtagctaagaacgagtccttgtatttataaacttacagttcctgtttccatgaaatttctcttccaa |
199 |
Q |
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||||||| | | | ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
17597370 |
tgccact---act---ttcccttagtcaagcatgtagctaagaacgagtccttgtatttatgaacttacagttcctgtttccatgaaatttctcttccaa |
17597277 |
T |
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| Q |
200 |
gggcatatcttgaacggactggctcctgactctccttatagagtttgatacccattaaatgattccttttttaccttcaaccaat |
284 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17597276 |
gggcatatcttgaacctactggctcctgactctccttatagagtttgatacccattaaatgattccttttttaccttcaaccaat |
17597192 |
T |
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