View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10954A_low_208 (Length: 296)

Name: NF10954A_low_208
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10954A_low_208
NF10954A_low_208
[»] chr6 (27 HSPs)
chr6 (9-274)||(5688749-5689020)
chr6 (9-274)||(5177917-5178177)
chr6 (9-274)||(5279742-5280008)
chr6 (24-134)||(5242504-5242614)
chr6 (9-158)||(5126597-5126746)
chr6 (9-236)||(5065338-5065566)
chr6 (25-134)||(5427094-5427203)
chr6 (9-129)||(5346207-5346327)
chr6 (11-126)||(5398226-5398341)
chr6 (9-127)||(5180773-5180891)
chr6 (28-132)||(5100812-5100916)
chr6 (28-132)||(5135913-5136017)
chr6 (9-132)||(5156007-5156130)
chr6 (9-132)||(5372275-5372398)
chr6 (9-143)||(5098389-5098523)
chr6 (29-130)||(23127306-23127407)
chr6 (9-132)||(5351578-5351701)
chr6 (9-134)||(5352855-5352980)
chr6 (10-132)||(2939094-2939216)
chr6 (9-134)||(5072674-5072799)
chr6 (22-127)||(5283223-5283328)
chr6 (33-127)||(5439213-5439307)
chr6 (16-125)||(5253718-5253827)
chr6 (9-101)||(5334363-5334455)
chr6 (16-130)||(5124439-5124553)
chr6 (22-127)||(5256113-5256218)
chr6 (16-127)||(5448794-5448905)
[»] chr4 (7 HSPs)
chr4 (23-155)||(4122615-4122747)
chr4 (27-205)||(25569036-25569217)
chr4 (22-167)||(4132577-4132719)
chr4 (22-132)||(4319296-4319406)
chr4 (88-134)||(7884147-7884193)
chr4 (89-134)||(4346621-4346666)
chr4 (89-134)||(4362810-4362855)
[»] chr3 (4 HSPs)
chr3 (8-126)||(47985393-47985511)
chr3 (8-126)||(48003967-48004085)
chr3 (8-126)||(47994680-47994798)
chr3 (8-126)||(48013252-48013370)
[»] chr7 (1 HSPs)
chr7 (9-134)||(36212913-36213038)
[»] scaffold0294 (1 HSPs)
scaffold0294 (29-125)||(7878-7974)


Alignment Details
Target: chr6 (Bit Score: 232; Significance: 1e-128; HSPs: 27)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 9 - 274
Target Start/End: Complemental strand, 5689020 - 5688749
Alignment:
Q  9 agatgaagagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaaca 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  5689020 agatgaagagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgagaacggtttcattgtgaagaaaacaaca 5688921  T
Q  109 gtttatctcgtatatgatgaaccaatccgtgaaaatatggagcaatgtcaagaacaagaagaaaatgatattgtgtg---tagtggtgatgaagatgaat 205  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||    
T  5688920 gtttatctcgtatatgatgaaccaattcgtgaaaatatggagcaatgtcaagaacaagaagaaaatgatattgtgtgtagtagtggtgatgaagatgaat 5688821  T
Q  206 gctattaagagaggtctcttctaatgcacaagattaccatgtcattgt---tagtagtggtgatgaaaatga 274  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||   |||||||||||||||||||||    
T  5688820 gctattaagagaggtctcttctaatgcacaagattacaatgtcattgttggtagtagtggtgatgaaaatga 5688749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 9 - 274
Target Start/End: Original strand, 5177917 - 5178177
Alignment:
Q  9 agatgaagagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaaca 108  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||| |||||||||||||||||||||||||||    
T  5177917 agatgaagagggtcagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgttgttgtttttgagaacggtttcattgtgaagaaaacaaca 5178016  T
Q  109 gtttatctcgtatatgatgaaccaatccgtgaaaatatggagcaatgtcaagaacaagaagaaaatgatattgtgtgtagtggtgatgaagatgaatgct 208  Q
    ||||||||||||||||||||||||||  | ||||| ||||||||||| |||||||||||||||      |||||||||||||||||||||||||||||||    
T  5178017 gtttatctcgtatatgatgaaccaattggagaaaaaatggagcaatgccaagaacaagaagaa------attgtgtgtagtggtgatgaagatgaatgct 5178110  T
Q  209 at-taagagaggtctcttctaatgcacaagattaccatgtcattgttagtagtggtgatgaaaatga 274  Q
     | | ||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  5178111 ttgtcagagaagtctcttctaatgcacaagattacaatgtcattgttagtagtggtgatgaaaatga 5178177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 9 - 274
Target Start/End: Original strand, 5279742 - 5280008
Alignment:
Q  9 agatgaagagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaaca 108  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||| |||||||||||||||||||||||||||    
T  5279742 agatgaagagggtcagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgttgttgtttttgagaacggtttcattgtgaagaaaacaaca 5279841  T
Q  109 gtttatctcgtatatgatgaaccaatccgtgaaaatatggagcaa---tgtcaagaacaagaagaaaatgatattgtgtgtagtggtgatgaagatgaat 205  Q
    ||||||||||||||||||||||||||  | ||||| |||||||||   || |||||||||||||||      ||||||||||||||||||||||||||||    
T  5279842 gtttatctcgtatatgatgaaccaattggagaaaaaatggagcaatattgccaagaacaagaagaa------attgtgtgtagtggtgatgaagatgaat 5279935  T
Q  206 gctat-taagagaggtctcttctaatgcacaagattaccatgtcattgt---tagtagtggtgatgaaaatga 274  Q
    ||| | | ||||| |||||||||||||||||||| ||| ||||||||||   |||||||||||||||||||||    
T  5279936 gctttgtcagagaagtctcttctaatgcacaagaatacaatgtcattgttagtagtagtggtgatgaaaatga 5280008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 24 - 134
Target Start/End: Complemental strand, 5242614 - 5242504
Alignment:
Q  24 gagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtatat 123  Q
    ||||||||||| ||||||||||||| |||||||||||||||| |||| ||||||||| ||| |||||||||||||||| |||  ||||||||||||||||    
T  5242614 gagagtagtatgaagtatagaacctggtaacaaagtggaggtcgtttttgtttttgagaacagtttcattgtgaagaagacagtagtttatctcgtatat 5242515  T
Q  124 gatgaaccaat 134  Q
    |||||||||||    
T  5242514 gatgaaccaat 5242504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 9 - 158
Target Start/End: Complemental strand, 5126746 - 5126597
Alignment:
Q  9 agatgaagagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaaca 108  Q
    |||||| |||||  ||||||||||||||||||||||| || |||||||||| ||| |||||  ||||||| | |||||||||||||||||||| ||| |     
T  5126746 agatgaggagggggagagagtagtatcaagtatagaagctggtaacaaagttgagattgttgttgtttttaagaacggtttcattgtgaagaagacagct 5126647  T
Q  109 gtttatctcgtatatgatgaaccaatccgtgaaaatatggagcaatgtca 158  Q
    ||||||||| ||||||||||||||||  |||||| |||| ||||||||||    
T  5126646 gtttatctcatatatgatgaaccaattggtgaaactatgaagcaatgtca 5126597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 9 - 236
Target Start/End: Complemental strand, 5065566 - 5065338
Alignment:
Q  9 agatgaagagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaaca 108  Q
    |||||| ||||| |||||||||||||||||||| |||||| | || ||||||||  |||||  ||||||||| ||||||||| |||||||||  ||||||    
T  5065566 agatgaggaggggcagagagtagtatcaagtattgaacctggaaataaagtggattttgttgttgtttttgagaacggtttcgttgtgaagaggacaaca 5065467  T
Q  109 gtttatctcgtatatgatgaaccaatccgtgaaaatatggagcaatgtcaagaacaagaagaaaatgatattgtgtgtagtggtgatgaagatgaatgct 208  Q
    ||||||||| ||||||||||||||||   ||||||   |||| | ||||| | ||||||  | |||| ||||||  |||| ||||||||| |||||||||    
T  5065466 gtttatctcatatatgatgaaccaattgctgaaaagggggaggagtgtcatgcacaagataagaatgttattgttagtagcggtgatgaaaatgaatgct 5065367  T
Q  209 at-taagagaggtctcttctaatgcacaa 236  Q
     | || | ||| |||||||| ||||||||    
T  5065366 ttctaggcgagatctcttctcatgcacaa 5065338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 25 - 134
Target Start/End: Original strand, 5427094 - 5427203
Alignment:
Q  25 agagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtatatg 124  Q
    |||||||||||||||||||||||| |||||||| ||||||| |||| ||||||||| ||| ||||| |||||| ||| |||  |||||||||||||||||    
T  5427094 agagtagtatcaagtatagaacctggtaacaaaatggaggtcgtttttgtttttgagaacagtttcgttgtgacgaagacagtagtttatctcgtatatg 5427193  T
Q  125 atgaaccaat 134  Q
    ||||||||||    
T  5427194 atgaaccaat 5427203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 9 - 129
Target Start/End: Original strand, 5346207 - 5346327
Alignment:
Q  9 agatgaagagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaaca 108  Q
    |||||| ||||| |||||||| |||||||||||||||||| |||||||||||||||||||   |||| |||| || ||||||||||||||||| ||| ||    
T  5346207 agatgaggagggccagagagttgtatcaagtatagaacctggtaacaaagtggaggttgtcgttgttattgagaatggtttcattgtgaagaagacagca 5346306  T
Q  109 gtttatctcgtatatgatgaa 129  Q
     |||||||| |||||||||||    
T  5346307 atttatctcatatatgatgaa 5346327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 11 - 126
Target Start/End: Original strand, 5398226 - 5398341
Alignment:
Q  11 atgaagagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagt 110  Q
    |||||||||| || || ||||||||||||||||||||| |||||||||| |||||||| | |||||| || || | ||||||||||||||| ||||||||    
T  5398226 atgaagaggggcaaagggtagtatcaagtatagaacctggtaacaaagttgaggttgtctttgttttcgagaatgatttcattgtgaagaagacaacagt 5398325  T
Q  111 ttatctcgtatatgat 126  Q
    |||||| |||||||||    
T  5398326 ttatcttgtatatgat 5398341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 9 - 127
Target Start/End: Complemental strand, 5180891 - 5180773
Alignment:
Q  9 agatgaagagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaaca 108  Q
    |||||||||||| ||||| ||||||||||| ||||||||  |||||||||||||||| |||| ||||||||| ||  |||||||||||||||| ||| ||    
T  5180891 agatgaagagggtcagagggtagtatcaagcatagaacccggtaacaaagtggaggtcgtttttgtttttgagaaaagtttcattgtgaagaagacagca 5180792  T
Q  109 gtttatctcgtatatgatg 127  Q
     ||||||| ||||||||||    
T  5180791 atttatctggtatatgatg 5180773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 28 - 132
Target Start/End: Complemental strand, 5100916 - 5100812
Alignment:
Q  28 gtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtatatgatg 127  Q
    ||||||||||||||||||||  |||||||||||||||| |||  ||||||||| ||| ||||||||||||| || ||| |||||||||||||||| ||||    
T  5100916 gtagtatcaagtatagaacccggtaacaaagtggaggtcgttgttgtttttgagaacagtttcattgtgaaaaagacagcagtttatctcgtatacgatg 5100817  T
Q  128 aacca 132  Q
    |||||    
T  5100816 aacca 5100812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 28 - 132
Target Start/End: Complemental strand, 5136017 - 5135913
Alignment:
Q  28 gtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtatatgatg 127  Q
    ||||||||||||||||||||  |||||||||||||||| |||  ||||||||| ||| ||||||||||||| || ||| |||||||||||||||| ||||    
T  5136017 gtagtatcaagtatagaacccggtaacaaagtggaggtcgttgttgtttttgagaacagtttcattgtgaaaaagacagcagtttatctcgtatacgatg 5135918  T
Q  128 aacca 132  Q
    |||||    
T  5135917 aacca 5135913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 9 - 132
Target Start/End: Complemental strand, 5156130 - 5156007
Alignment:
Q  9 agatgaagagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaaca 108  Q
    |||||||||||| ||||| |||||||||||| |||||||| ||||||||||||||||   || |||||| || |    ||||||||||||||| ||||||    
T  5156130 agatgaagaggggcagagggtagtatcaagtctagaacctggtaacaaagtggaggtccattttgttttcgagattaatttcattgtgaagaagacaaca 5156031  T
Q  109 gtttatctcgtatatgatgaacca 132  Q
    |||||||| ||||| |||||||||    
T  5156030 gtttatcttgtatacgatgaacca 5156007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 9 - 132
Target Start/End: Original strand, 5372275 - 5372398
Alignment:
Q  9 agatgaagagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaaca 108  Q
    |||||||||||| ||||| |||||||||||| |||||||| |||||||||||||| |   || |||| | || || | ||||||||||||||| ||||||    
T  5372275 agatgaagaggggcagagggtagtatcaagtctagaacctggtaacaaagtggagatccattttgttctcgagaatgatttcattgtgaagaagacaaca 5372374  T
Q  109 gtttatctcgtatatgatgaacca 132  Q
     ||||||||||||| |||||||||    
T  5372375 atttatctcgtatacgatgaacca 5372398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 9 - 143
Target Start/End: Original strand, 5098389 - 5098523
Alignment:
Q  9 agatgaagagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaaca 108  Q
    |||||| ||| | ||||| ||| ||||||||||||||||| ||||||||||||||||  ||  |||||| || ||| ||||||||||||| || ||| ||    
T  5098389 agatgaggagagccagagggtaatatcaagtatagaacctggtaacaaagtggaggtcattgttgttttcgagaacagtttcattgtgaaaaagacagca 5098488  T
Q  109 gtttatctcgtatatgatgaaccaatccgtgaaaa 143  Q
    |||||||| ||||||||||||| |||  |||||||    
T  5098489 gtttatctggtatatgatgaacaaattggtgaaaa 5098523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 29 - 130
Target Start/End: Complemental strand, 23127407 - 23127306
Alignment:
Q  29 tagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtatatgatga 128  Q
    |||||||||||  ||||||| |||||||| |||||||||||   |||||||| || |||||| |||||||||| |||||||||||||| |||||||||||    
T  23127407 tagtatcaagtgcagaacctggtaacaaaatggaggttgttgtcgtttttgagaatggtttcgttgtgaagaatacaacagtttatcttgtatatgatga 23127308  T
Q  129 ac 130  Q
    ||    
T  23127307 ac 23127306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 9 - 132
Target Start/End: Original strand, 5351578 - 5351701
Alignment:
Q  9 agatgaagagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaaca 108  Q
    |||||| ||||| |||||  |||||||||||||||||||  ||||||||||||||||  ||| |||||| || || | || ||||||||| || |||  |    
T  5351578 agatgaggaggggcagaggttagtatcaagtatagaacccagtaacaaagtggaggtcatttttgttttcgagaatgattgcattgtgaaaaagacagta 5351677  T
Q  109 gtttatctcgtatatgatgaacca 132  Q
    ||||||||||||||||||||||||    
T  5351678 gtttatctcgtatatgatgaacca 5351701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 9 - 134
Target Start/End: Complemental strand, 5352980 - 5352855
Alignment:
Q  9 agatgaagagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaaca 108  Q
    |||||| ||||| |||||||||||||||||||| || ||| || ||||||| ||||| |||  |||||| || ||  ||||||| |||||||| ||||||    
T  5352980 agatgaggaggggcagagagtagtatcaagtatggatcctggtgacaaagtagaggtggttattgttttcgagaattgtttcatcgtgaagaagacaaca 5352881  T
Q  109 gtttatctcgtatatgatgaaccaat 134  Q
     ||||||| ||||||||| |||||||    
T  5352880 atttatctggtatatgataaaccaat 5352855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 10 - 132
Target Start/End: Original strand, 2939094 - 2939216
Alignment:
Q  10 gatgaagagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacag 109  Q
    |||||||| || ||||| |||||||||||| || ||||| ||||||||||||||||   || |||| | || || | || ||||||||||||  |||||     
T  2939094 gatgaagaagggcagagggtagtatcaagtctataacctggtaacaaagtggaggtccattttgttatcgagaatgattgcattgtgaagaaggcaacaa 2939193  T
Q  110 tttatctcgtatatgatgaacca 132  Q
    |||||||||||||||||||||||    
T  2939194 tttatctcgtatatgatgaacca 2939216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 9 - 134
Target Start/End: Complemental strand, 5072799 - 5072674
Alignment:
Q  9 agatgaagagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaaca 108  Q
    |||||| |||||  ||||| |||||||||||||||| ||| ||||| |||||||||||||   |||| |||| |||| |||||||||||| || |||| |    
T  5072799 agatgatgagggcgagagattagtatcaagtatagagcctggtaaccaagtggaggttgtcgttgttgttgagaacgatttcattgtgaaaaagacaata 5072700  T
Q  109 gtttatctcgtatatgatgaaccaat 134  Q
     |||||||| |||| |||||| ||||    
T  5072699 atttatctcatatacgatgaatcaat 5072674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 22 - 127
Target Start/End: Complemental strand, 5283328 - 5283223
Alignment:
Q  22 cagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtat 121  Q
    ||||| ||| |||||||||| |||||  ||||||||||||||||  | | ||||||||| ||| |||||||||||||||| ||| || ||||||| ||||    
T  5283328 cagagggtaatatcaagtatcgaaccaggtaacaaagtggaggtcatatttgtttttgaaaacagtttcattgtgaagaagacagcaatttatctggtat 5283229  T
Q  122 atgatg 127  Q
    ||||||    
T  5283228 atgatg 5283223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 33 - 127
Target Start/End: Original strand, 5439213 - 5439307
Alignment:
Q  33 atcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtatatgatg 127  Q
    |||||||||||||||| ||||||||||||||||||||| ||||||  | || | ||||||||  || || ||| ||| |||||||||||||||||    
T  5439213 atcaagtatagaacctggtaacaaagtggaggttgtttttgttttcaagaatgatttcattgccaaaaagacagcagcttatctcgtatatgatg 5439307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 16 - 125
Target Start/End: Original strand, 5253718 - 5253827
Alignment:
Q  16 gagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatc 115  Q
    ||||| || |||||| ||| |||||| |||||| | || ||||||||| |||||  ||||||||| ||| |||||||||||||||  || ||||||||||    
T  5253718 gaggggcaaagagtattattaagtattgaacctggaaataaagtggagtttgttgttgtttttgagaacagtttcattgtgaagaggacgacagtttatc 5253817  T
Q  116 tcgtatatga 125  Q
    || |||||||    
T  5253818 tcatatatga 5253827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 9 - 101
Target Start/End: Original strand, 5334363 - 5334455
Alignment:
Q  9 agatgaagagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaa 101  Q
    ||||||||||||  |||| ||||||||| || |||||||| |||||||||||||||| |||| |||||| || || | ||||||| |||||||    
T  5334363 agatgaagaggggtagagggtagtatcatgtctagaacctggtaacaaagtggaggtcgtttttgttttcgagaatgatttcattttgaagaa 5334455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 130
Target Start/End: Complemental strand, 5124553 - 5124439
Alignment:
Q  16 gagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatc 115  Q
    ||||| || ||| ||||||| |||||||||||| |||| ||||||||  |||||| ||||||| | ||| | |||||||||||| | |||||| | |||     
T  5124553 gaggggcatagattagtatcgagtatagaacctggtaataaagtggaatttgtttttgtttttaagaaccgcttcattgtgaaggagacaacaatgtata 5124454  T
Q  116 tcgtatatgatgaac 130  Q
    |  ||||||||||||    
T  5124453 ttatatatgatgaac 5124439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 22 - 127
Target Start/End: Complemental strand, 5256218 - 5256113
Alignment:
Q  22 cagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtat 121  Q
    ||||| ||| |||||||||| |||||  |||||||||||||||| || | ||||||  | || | ||||||||||||||| ||| || ||||| | ||||    
T  5256218 cagagggtaatatcaagtattgaaccaggtaacaaagtggaggtcgtatttgttttcaagaatgatttcattgtgaagaagacagcaatttatttggtat 5256119  T
Q  122 atgatg 127  Q
    ||||||    
T  5256118 atgatg 5256113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 16 - 127
Target Start/End: Original strand, 5448794 - 5448905
Alignment:
Q  16 gagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatc 115  Q
    ||||| |||||  |||||||||||||||||||  | |||||||||||| | |||| |||||| || || | ||||| |||| |||| |||  ||| ||||    
T  5448794 gaggggcagaggttagtatcaagtatagaacccggaaacaaagtggagatcgtttttgttttcgagaatgatttcactgtggagaagacagtagtatatc 5448893  T
Q  116 tcgtatatgatg 127  Q
    | ||||||||||    
T  5448894 tggtatatgatg 5448905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 23 - 155
Target Start/End: Complemental strand, 4122747 - 4122615
Alignment:
Q  23 agagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtata 122  Q
    ||||||| ||||||| ||| |||||| || ||||||||||| |||||  ||||||||  ||| |||||||||||| ||| ||| ||||||||||| ||||    
T  4122747 agagagtggtatcaaatatggaacctggtgacaaagtggagattgttgttgtttttggaaacagtttcattgtgatgaagacatcagtttatctcatata 4122648  T
Q  123 tgatgaaccaatccgtgaaaatatggagcaatg 155  Q
    ||||||||||||| ||||||| || ||||||||    
T  4122647 tgatgaaccaatcggtgaaaaaatagagcaatg 4122615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 27 - 205
Target Start/End: Original strand, 25569036 - 25569217
Alignment:
Q  27 agtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttga---caacggtttcattgtgaagaaaacaacagtttatctcgtatat 123  Q
    |||||||||||||||||||||| | ||||||||||||||||||| |||||||||      | ||||||  |||||||| ||||||||||||||||||||     
T  25569036 agtagtatcaagtatagaacctggaaacaaagtggaggttgtttttgtttttgagtggcgcagtttcaaagtgaagaatacaacagtttatctcgtatac 25569135  T
Q  124 gatgaaccaatccgtgaaaatatggagcaatgtcaagaacaagaagaaaatgatattgtgtgtagtggtgatgaagatgaat 205  Q
    ||||||| |||  | ||||  ||||||||| |||||  |  ||||||||||| |||||| | || |||||||||| ||||||    
T  25569136 gatgaactaattggcgaaataatggagcaaagtcaaacatcagaagaaaatgctattgtttttattggtgatgaaaatgaat 25569217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 22 - 167
Target Start/End: Complemental strand, 4132719 - 4132577
Alignment:
Q  22 cagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtat 121  Q
    |||||||||||||||| ||| |||||| || ||||||| ||| |||||   |||||||  ||| |||||||||||| ||| ||| ||||||||||| |||    
T  4132719 cagagagtagtatcaaatatggaacctggtgacaaagtcgagattgtt---gtttttgggaacagtttcattgtgatgaagacagcagtttatctcatat 4132623  T
Q  122 atgatgaaccaatccgtgaaaatatggagcaatgtcaagaacaaga 167  Q
    |||||||||||||  |||||||| ||| ||||||||| | ||||||    
T  4132622 atgatgaaccaattggtgaaaatttggggcaatgtcatgcacaaga 4132577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 22 - 132
Target Start/End: Complemental strand, 4319406 - 4319296
Alignment:
Q  22 cagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtat 121  Q
    |||||||| ||| ||| ||| |||||| || |||| |||||| |||||   |||||||  ||| |||||||||||| ||| ||| ||||||||||| |||    
T  4319406 cagagagttgtaacaaatatggaacctggtgacaaggtggagattgttgtcgtttttgggaacagtttcattgtgatgaagacagcagtttatctcatat 4319307  T
Q  122 atgatgaacca 132  Q
    |||||||||||    
T  4319306 atgatgaacca 4319296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 88 - 134
Target Start/End: Complemental strand, 7884193 - 7884147
Alignment:
Q  88 ttcattgtgaagaaaacaacagtttatctcgtatatgatgaaccaat 134  Q
    ||||||||||||||||||||| ||||||| || ||||||||||||||    
T  7884193 ttcattgtgaagaaaacaacaatttatcttgtctatgatgaaccaat 7884147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 134
Target Start/End: Original strand, 4346621 - 4346666
Alignment:
Q  89 tcattgtgaagaaaacaacagtttatctcgtatatgatgaaccaat 134  Q
    ||||||||| ||| ||| ||||||||||| ||||||||||||||||    
T  4346621 tcattgtgacgaagacagcagtttatctcatatatgatgaaccaat 4346666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 134
Target Start/End: Original strand, 4362810 - 4362855
Alignment:
Q  89 tcattgtgaagaaaacaacagtttatctcgtatatgatgaaccaat 134  Q
    ||||||||| ||| ||| ||||||||||| ||||||||||||||||    
T  4362810 tcattgtgacgaagacagcagtttatctcatatatgatgaaccaat 4362855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 5e-25; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 8 - 126
Target Start/End: Complemental strand, 47985511 - 47985393
Alignment:
Q  8 gagatgaagagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaac 107  Q
    ||||||| |||||  |||||||||||||||||||||||||  |||||||||||||||| |||  ||||||||| || ||||||||||||||||  | | |    
T  47985511 gagatgaggagggggagagagtagtatcaagtatagaacccggtaacaaagtggaggtggttgttgtttttgagaatggtttcattgtgaagaggatagc 47985412  T
Q  108 agtttatctcgtatatgat 126  Q
    ||||||||| |||||||||    
T  47985411 agtttatcttgtatatgat 47985393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 8 - 126
Target Start/End: Complemental strand, 48004085 - 48003967
Alignment:
Q  8 gagatgaagagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaac 107  Q
    ||||||| |||||  |||||||||||||||||||||||||  |||||||||||||||| |||  ||||||||| || ||||||||||||||||  | | |    
T  48004085 gagatgaggagggggagagagtagtatcaagtatagaacccggtaacaaagtggaggtggttgttgtttttgagaatggtttcattgtgaagaggatagc 48003986  T
Q  108 agtttatctcgtatatgat 126  Q
    ||||||||| |||||||||    
T  48003985 agtttatcttgtatatgat 48003967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 8 - 126
Target Start/End: Complemental strand, 47994798 - 47994680
Alignment:
Q  8 gagatgaagagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaac 107  Q
    ||||||| |||||  ||||||||||||||||||||||| |  |||||||||||||||| |||  ||||||||| || ||||||||||||||||  | | |    
T  47994798 gagatgaggagggggagagagtagtatcaagtatagaatccggtaacaaagtggaggtggttgttgtttttgagaatggtttcattgtgaagaggatagc 47994699  T
Q  108 agtttatctcgtatatgat 126  Q
    ||||||||| |||||||||    
T  47994698 agtttatcttgtatatgat 47994680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 8 - 126
Target Start/End: Complemental strand, 48013370 - 48013252
Alignment:
Q  8 gagatgaagagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaac 107  Q
    ||||||| |||||  ||||||||||||||||||||||| |  |||||||||||||||| |||  ||||||||| || ||||||||||||||||  | | |    
T  48013370 gagatgaggagggggagagagtagtatcaagtatagaatccggtaacaaagtggaggtggttgttgtttttgagaatggtttcattgtgaagaggatagc 48013271  T
Q  108 agtttatctcgtatatgat 126  Q
    ||||||||| |||||||||    
T  48013270 agtttatcttgtatatgat 48013252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 9 - 134
Target Start/End: Complemental strand, 36213038 - 36212913
Alignment:
Q  9 agatgaagagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaaca 108  Q
    |||||| ||||| |||||| |||||||||||||||||||| || | ||| |||||||||||  ||||||||| |||  ||||||||||||||| ||| |     
T  36213038 agatgaggaggggcagagattagtatcaagtatagaacctggtgataaaatggaggttgttgttgtttttgagaacaatttcattgtgaagaagacagcg 36212939  T
Q  109 gtttatctcgtatatgatgaaccaat 134  Q
     |||||||| | ||||||||||||||    
T  36212938 atttatctcatttatgatgaaccaat 36212913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 29 - 125
Target Start/End: Complemental strand, 7974 - 7878
Alignment:
Q  29 tagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtatatga 125  Q
    ||||||||||| |||||||  | ||||||||||||||||||  ||||||||   |||||||||||| |||  |||||||| |||||||  |||||||    
T  7974 tagtatcaagtgtagaacccggaaacaaagtggaggttgttgttgtttttggggacggtttcattgcgaaagaaacaacaatttatcttatatatga 7878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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