View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10954A_low_209 (Length: 296)

Name: NF10954A_low_209
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10954A_low_209
NF10954A_low_209
[»] chr2 (1 HSPs)
chr2 (18-296)||(36166142-36166418)


Alignment Details
Target: chr2 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 18 - 296
Target Start/End: Original strand, 36166142 - 36166418
Alignment:
Q  18 acatcaatctaatattccctttcaaaaggtacaagaaagccttgatgaaagcaaaattgagaccatcgggtcccatacttttattaccctcaattttcaa 117  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  36166142 acatcaatctaatattctctttcaaaaggtacaagaaagccttgatgaaagcaaaattgagaccatcgggtcccatacttt-attaccctcaattttcaa 36166240  T
Q  118 aacgactgcttctatttccaaaagtgaaaaaggcgccaccaacaaagcattttccacctcctaaagccttgcaaagtttaccccatccaactttggccga 217  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||| |||| ||||||||| ||||||||||||||||||||||||||||||||| |||    
T  36166241 aacgactgcttctatttccaaaagtgaaaaaggtgccaccaacaaagtatttcccacctcctcaagccttgcaaagtttaccccatccaactttggtcga 36166340  T
Q  218 tcccaagtagatgagacatggctcctaaagtaattcaccaccgtctccctcacttctaatgttttttgaatccaaacct 296  Q
    ||||||||||||||||||||||||||||| ||||||||||||| | ||||||| |||||||||||||||||||||||||    
T  36166341 tcccaagtagatgagacatggctcctaaaataattcaccaccg-ccccctcacctctaatgttttttgaatccaaacct 36166418  T

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