View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10954A_low_21 (Length: 444)

Name: NF10954A_low_21
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10954A_low_21
NF10954A_low_21
[»] chr3 (14 HSPs)
chr3 (11-438)||(5484450-5484875)
chr3 (11-256)||(5525676-5525919)
chr3 (11-196)||(5828158-5828344)
chr3 (11-198)||(5502897-5503082)
chr3 (14-198)||(5490083-5490266)
chr3 (11-196)||(5454907-5455092)
chr3 (11-194)||(20343528-20343712)
chr3 (27-198)||(5446346-5446517)
chr3 (27-174)||(5854204-5854351)
chr3 (11-127)||(5848887-5849003)
chr3 (15-128)||(5802494-5802607)
chr3 (250-314)||(5525588-5525652)
chr3 (376-436)||(5525497-5525557)
chr3 (370-438)||(20343322-20343390)
[»] chr6 (1 HSPs)
chr6 (27-198)||(25809295-25809466)


Alignment Details
Target: chr3 (Bit Score: 369; Significance: 0; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 11 - 438
Target Start/End: Complemental strand, 5484875 - 5484450
Alignment:
Q  11 cagagatggtgggagcggctgcttactttggtttggcaacattgtggacatgagaaagcatcctgatcaaggacaagacatttacatacggctggcatct 110  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||   ||||||||| |||||||||||||||||||||    
T  5484875 cagagatggtgggagtggctgcttactttggtttggcaacattgtggacatgagaaaacatcctgacgtaggacaagaaatttacatacggctggcatct 5484776  T
Q  111 tcagaacttggtattttcatttccaaagacatattttatctcttcagtcagatatattgcacaaatttatttatttcatcatttgtgtggtagaactggt 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||  |||||    
T  5484775 tcagaacttggtattttcatttccaaagacatattttatctcttcagtcagatatatagcacaaatttatttatttcatcatttgtgtgatag--ctggt 5484678  T
Q  211 actgataccttaactgtttaattaataggaaaagattacaaaacatataaatgccaacttctggaaataatcaatctctaggaattatgtactgttaaaa 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5484677 actgataccttaactgtttaattaataggaaaagattacaaaacatataaatgccaacttctggaaataatcaatctctaggaattatgtactgttaaaa 5484578  T
Q  311 acataaaattacgcggcattaataattctcttttcacttttccctatagatcttttttccttctttatctgcttcttgactgacatttacttcaaactac 410  Q
    ||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||    
T  5484577 acataaaattacgtggcattaataattctcttttcacttttccctgtagatcttttttccttctttatctgcttcttgaatgacatttacttcaacctac 5484478  T
Q  411 agatcatataaagaatacgagaaacttg 438  Q
    ||||||||||||||||||||||||||||    
T  5484477 agatcatataaagaatacgagaaacttg 5484450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 11 - 256
Target Start/End: Complemental strand, 5525919 - 5525676
Alignment:
Q  11 cagagatggtgggagcggctgcttactttggtttggcaacattgtggacatgagaaagcatcctgatcaaggacaagacatttacatacggctggcatct 110  Q
    ||||||||||||||| ||||||||||||||||||  ||||||||||||||||||||| ||||||||   |||||||||||||||||||||  ||||||||    
T  5525919 cagagatggtgggagtggctgcttactttggtttaacaacattgtggacatgagaaaacatcctgacgtaggacaagacatttacatacgattggcatct 5525820  T
Q  111 tcagaacttggtattttcatttccaaagacatattttatctcttcagtcagatatattgcacaaatttatttatttcatcatttgtgtggtagaactggt 210  Q
    ||||||||||||||||| | |||| |  |||||||||  || |||||| |||||||| ||||  |||||| |||||||||||||||||| |||||||||     
T  5525819 tcagaacttggtattttaacttcctatcacatatttttccttttcagttagatatatagcac--atttatatatttcatcatttgtgtgatagaactggc 5525722  T
Q  211 actgataccttaactgtttaattaataggaaaagattacaaaacat 256  Q
    |||| ||||||||| |||||||||||||||| ||||||||||||||    
T  5525721 actgctaccttaacagtttaattaataggaatagattacaaaacat 5525676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 11 - 196
Target Start/End: Original strand, 5828158 - 5828344
Alignment:
Q  11 cagagatggtgggagcggctgcttactttggtttggcaacattgtggacatgagaaagcatcctgatcaaggacaagacatttacatacggctggcatct 110  Q
    ||||||||||||||| ||||||||||||||||||  ||| ||||||||||||||||| ||||||||   ||||||||||||||||||||| || ||||||    
T  5828158 cagagatggtgggagtggctgcttactttggtttaacaatattgtggacatgagaaaacatcctgacgtaggacaagacatttacatacgactcgcatct 5828257  T
Q  111 tcagaacttggtattttcatttccaaagacatattttatctcttcagtcagatatattgcacaaatttatttat-ttcatcatttgt 196  Q
    || ||||||||||||||||||||||||||||||||||| ||||||||| ||||  || | |||||||||| ||| |||| |||||||    
T  5828258 tccgaacttggtattttcatttccaaagacatattttacctcttcagttagatgcataggacaaatttatatatattcagcatttgt 5828344  T

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Target: chr3; HSP #4
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 11 - 198
Target Start/End: Complemental strand, 5503082 - 5502897
Alignment:
Q  11 cagagatggtgggagcggctgcttactttggtttggcaacattgtggacatgagaaagcatcctgatcaaggacaagacatttacatacggctggcatct 110  Q
    ||||||||||||||| ||||||||||||||||||| ||||||||| ||||||||||| ||||| || |||||||||||||||||||||||||||||||||    
T  5503082 cagagatggtgggagtggctgcttactttggtttgacaacattgtcgacatgagaaaacatccagaccaaggacaagacatttacatacggctggcatct 5502983  T
Q  111 tcagaacttggtattttcatttccaaagacatattttatctcttcagtcagatatattgcacaaatttatttatttcatcatttgtgt 198  Q
    ||||| |||||||||||||||| | |  ||||||||| ||  |||||| |||||||  ||| |||||||  ||||||| |||||||||    
T  5502982 tcagagcttggtattttcatttgctattacatattttgtcctttcagttagatata--gcataaatttacatatttcaccatttgtgt 5502897  T

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Target: chr3; HSP #5
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 14 - 198
Target Start/End: Complemental strand, 5490266 - 5490083
Alignment:
Q  14 agatggtgggagcggctgcttactttggtttggcaacattgtggacatgagaaagcatcctgatcaaggacaagacatttacatacggctggcatcttca 113  Q
    |||||||||||| |||||| |||||||||||  ||||||||||||||||||||| ||||  || |||||||||||||||||||||||| |||||||||||    
T  5490266 agatggtgggagtggctgcatactttggtttaacaacattgtggacatgagaaaacatcaagaccaaggacaagacatttacatacggatggcatcttca 5490167  T
Q  114 gaacttggtattttcatttccaaagacatattttatctcttcagtcagatatattgcacaaatttatttatttcatcatttgtgt 198  Q
    ||||||||||||||||||||  |  ||||||||| ||| |||||| |||||||| ||| |||||||  ||||||| |||||||||    
T  5490166 gaacttggtattttcatttcttattacatattttgtcttttcagttagatatatagcataaattta-atatttcaccatttgtgt 5490083  T

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Target: chr3; HSP #6
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 11 - 196
Target Start/End: Complemental strand, 5455092 - 5454907
Alignment:
Q  11 cagagatggtgggagcggctgcttactttggtttggcaacattgtggacatgagaaagcatcctgatcaaggacaagacatttacatacggctggcatct 110  Q
    |||||||| |||||| |||||| |||||||||||  ||||||||||||||||||||| ||||  || |||||||||||||||||||||||| ||||||||    
T  5455092 cagagatgatgggagtggctgcatactttggtttcacaacattgtggacatgagaaaacatcaagaccaaggacaagacatttacatacggatggcatct 5454993  T
Q  111 tcagaacttggtattttcatttccaaagacatattttatctcttcagtcagatatattgcacaaatttatttatttcatcatttgt 196  Q
    |||||||||||||||||| ||||  |  ||||||||| ||| |||||| |||||||| ||| ||| |||| ||||||| |||||||    
T  5454992 tcagaacttggtattttcttttcttattacatattttgtcttttcagttagatatatagcataaacttatatatttcaccatttgt 5454907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 11 - 194
Target Start/End: Complemental strand, 20343712 - 20343528
Alignment:
Q  11 cagagatggtgggagcggctgcttactttggtttggcaacattgtggacatgagaaagcatcctgatcaaggacaagacatttacatacggctggcatct 110  Q
    ||||||||||||||| || |||||||||||||||| ||| ||| ||||||||||||| ||||  || ||||||||||||||||| |||||||| ||||||    
T  20343712 cagagatggtgggagtggttgcttactttggtttgacaatattttggacatgagaaaacatcgagaccaaggacaagacatttatatacggctagcatct 20343613  T
Q  111 tcagaacttggtattttcatttccaaagacatattttatctcttcagtcagatatattgcacaaattt-atttatttcatcattt 194  Q
    |||||||||||||||||||||||| |  |||| ||||  || | |||| ||||||||||||||||||| || ||||||| |||||    
T  20343612 tcagaacttggtattttcatttcctattacatctttttcctttccagttagatatattgcacaaatttcatatatttcagcattt 20343528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 27 - 198
Target Start/End: Complemental strand, 5446517 - 5446346
Alignment:
Q  27 ggctgcttactttggtttggcaacattgtggacatgagaaagcatcctgatcaaggacaagacatttacatacggctggcatcttcagaacttggtattt 126  Q
    ||||||||||| ||||||| | ||||||| ||||||||||  ||||  || |||||||||||||||||||||||||||||||||||||||||||||||||    
T  5446517 ggctgcttactctggtttgacgacattgttgacatgagaatacatcaagaccaaggacaagacatttacatacggctggcatcttcagaacttggtattt 5446418  T
Q  127 tcatttccaaagacatattttatctcttcagtcagatatattgcacaaatttatttatttcatcatttgtgt 198  Q
    ||||||   |  ||||||||| ||  |||||| |||||||| ||| |||||||  ||||||| |||||||||    
T  5446417 tcatttgttattacatattttgtcctttcagttagatatatagcataaatttacatatttcaccatttgtgt 5446346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 27 - 174
Target Start/End: Original strand, 5854204 - 5854351
Alignment:
Q  27 ggctgcttactttggtttggcaacattgtggacatgagaaagcatcctgatcaaggacaagacatttacatacggctggcatcttcagaacttggtattt 126  Q
    ||||||||||||||||||| ||||||||| || |||||||| ||||| || |||||||||||||||| ||||||||||||||||||||||||||||||||    
T  5854204 ggctgcttactttggtttgacaacattgttgatatgagaaaacatccagaccaaggacaagacattttcatacggctggcatcttcagaacttggtattt 5854303  T
Q  127 tcatttccaaagacatattttatctcttcagtcagatatattgcacaa 174  Q
     ||||||| |  |||| ||||  || ||||||| ||||||| ||||||    
T  5854304 acatttcctattacatcttttgccttttcagtctgatatatagcacaa 5854351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 11 - 127
Target Start/End: Original strand, 5848887 - 5849003
Alignment:
Q  11 cagagatggtgggagcggctgcttactttggtttggcaacattgtggacatgagaaagcatcctgatcaaggacaagacatttacatacggctggcatct 110  Q
    ||||||||||||||| ||||||||||||||||||  ||||||||||||||||||||| ||||||||   ||||||||||||||||||||| || ||||||    
T  5848887 cagagatggtgggagtggctgcttactttggtttaacaacattgtggacatgagaaaacatcctgacataggacaagacatttacatacgactcgcatct 5848986  T
Q  111 tcagaacttggtatttt 127  Q
    |||||||| ||||||||    
T  5848987 tcagaactcggtatttt 5849003  T

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Target: chr3; HSP #11
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 15 - 128
Target Start/End: Original strand, 5802494 - 5802607
Alignment:
Q  15 gatggtgggagcggctgcttactttggtttggcaacattgtggacatgagaaagcatcctgatcaaggacaagacatttacatacggctggcatcttcag 114  Q
    |||||||| || ||||||||||||||||||  ||| ||| ||||||||||||| ||||| ||   ||||||||||||||||||||| || ||||||||||    
T  5802494 gatggtggtagtggctgcttactttggtttaacaatattatggacatgagaaaacatccagacgtaggacaagacatttacatacgactcgcatcttcag 5802593  T
Q  115 aacttggtattttc 128  Q
    ||||||||||||||    
T  5802594 aacttggtattttc 5802607  T

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Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 250 - 314
Target Start/End: Complemental strand, 5525652 - 5525588
Alignment:
Q  250 aaaacatataaatgccaacttctggaaataatcaatctctaggaattatgtactgttaaaaacat 314  Q
    |||||| ||||||||||||||||| |||||||||| |||||||||||  |||| ||| |||||||    
T  5525652 aaaacacataaatgccaacttctgaaaataatcaacctctaggaattgagtaccgttcaaaacat 5525588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 376 - 436
Target Start/End: Complemental strand, 5525557 - 5525497
Alignment:
Q  376 tatctgcttcttgactgacatttacttcaaactacagatcatataaagaatacgagaaact 436  Q
    ||||||||| |||||||||||||||||||| |  ||||||||| |||||||| ||| ||||    
T  5525557 tatctgcttgttgactgacatttacttcaaccatcagatcataaaaagaataagaggaact 5525497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 370 - 438
Target Start/End: Complemental strand, 20343390 - 20343322
Alignment:
Q  370 cttctttatctgcttcttgactgacatttacttcaaactacagatcatataaagaatacgagaaacttg 438  Q
    ||||| || |||||| |||||||||||||| ||||| |  ||||||||| |||||||| ||| ||||||    
T  20343390 cttctatacctgcttgttgactgacatttatttcaaccctcagatcataaaaagaataagaggaacttg 20343322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 27 - 198
Target Start/End: Original strand, 25809295 - 25809466
Alignment:
Q  27 ggctgcttactttggtttggcaacattgtggacatgagaaagcatcctgatcaaggacaagacatttacatacggctggcatcttcagaacttggtattt 126  Q
    ||||||||||| ||||||| | ||||||| ||||||||||  ||||  || |||||||||||||||||||||||||||||||||||||||||||||||||    
T  25809295 ggctgcttactctggtttgacgacattgttgacatgagaatacatcaagaccaaggacaagacatttacatacggctggcatcttcagaacttggtattt 25809394  T
Q  127 tcatttccaaagacatattttatctcttcagtcagatatattgcacaaatttatttatttcatcatttgtgt 198  Q
    ||||||   |  ||||||||| ||  |||||| |||||||| ||| |||||||  ||||||| |||||||||    
T  25809395 tcatttgttattacatattttgtcctttcagttagatatatagcataaatttacatatttcaccatttgtgt 25809466  T

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