View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10954A_low_211 (Length: 295)

Name: NF10954A_low_211
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10954A_low_211
NF10954A_low_211
[»] chr5 (2 HSPs)
chr5 (1-147)||(5254449-5254589)
chr5 (206-289)||(5254644-5254727)
[»] chr7 (8 HSPs)
chr7 (19-147)||(4469734-4469858)
chr7 (206-288)||(4469598-4469680)
chr7 (206-288)||(39669603-39669685)
chr7 (19-147)||(38691057-38691179)
chr7 (19-82)||(39669443-39669506)
chr7 (211-256)||(38690952-38690997)
chr7 (206-250)||(4468349-4468393)
chr7 (24-75)||(4468526-4468577)
[»] chr1 (5 HSPs)
chr1 (19-172)||(20133868-20134016)
chr1 (206-288)||(24523691-24523773)
chr1 (19-82)||(24523869-24523932)
chr1 (211-289)||(20142132-20142209)
chr1 (206-257)||(20133787-20133838)
[»] chr8 (2 HSPs)
chr8 (19-172)||(6647846-6647995)
chr8 (206-288)||(6648025-6648107)
[»] chr6 (2 HSPs)
chr6 (24-147)||(11144219-11144338)
chr6 (206-257)||(11144106-11144157)
[»] chr2 (2 HSPs)
chr2 (19-147)||(13859575-13859699)
chr2 (206-288)||(13859754-13859836)
[»] scaffold0136 (2 HSPs)
scaffold0136 (206-284)||(40717-40795)
scaffold0136 (19-82)||(40888-40951)
[»] chr3 (2 HSPs)
chr3 (19-147)||(7551350-7551472)
chr3 (206-257)||(7551530-7551581)
[»] chr4 (1 HSPs)
chr4 (206-288)||(3993294-3993376)
[»] scaffold0416 (1 HSPs)
scaffold0416 (206-257)||(4368-4419)


Alignment Details
Target: chr5 (Bit Score: 89; Significance: 6e-43; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 5254449 - 5254589
Alignment:
Q  1 tcatgttaaaagatctaatatagagagagttgagagatgattagtttggcataaagtggcacatatgtagacagagttagtttggttacaaaagacaaac 100  Q
    |||||||||||||||||||||||||||  ||||||||| |||||||||||||||||||||||||||||||||||||||||||     || ||||||||||    
T  5254449 tcatgttaaaagatctaatatagagag--ttgagagattattagtttggcataaagtggcacatatgtagacagagttagtt-----accaaagacaaac 5254541  T
Q  101 gttagatggggtttt-tcttttctttggtggtacaaatttaaagagaa 147  Q
    |||||||| |||||| ||||||||||||||| |||||||||| |||||    
T  5254542 gttagatgaggttttttcttttctttggtggcacaaatttaatgagaa 5254589  T

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Target: chr5; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 206 - 289
Target Start/End: Original strand, 5254644 - 5254727
Alignment:
Q  206 atatggggatcggtgtttatattgccaaataaatagagaaaatagcactaccnnnnnnntagaaaacaaactatgatgtccatc 289  Q
    |||||||||||| |||||||||| |||||||||||||||||||||||||||        |||||||||||||||||||||||||    
T  5254644 atatggggatcgttgtttatattaccaaataaatagagaaaatagcactacaaaaaaaatagaaaacaaactatgatgtccatc 5254727  T

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Target: chr7 (Bit Score: 78; Significance: 2e-36; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 19 - 147
Target Start/End: Complemental strand, 4469858 - 4469734
Alignment:
Q  19 tatagagagagttgagagatgattagtttggcataaagtggcacatatgtagacagagttagtttggttacaaaagacaaacgttagatggggttttt-c 117  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||     || |||||||||||||||||| ||||||| |    
T  4469858 tatatagagagttgagagatgattagtttggcataaagtggcacatatgtagacatagttagtt-----accaaagacaaacgttagatgaggttttttc 4469764  T
Q  118 ttttctttggtggtacaaatttaaagagaa 147  Q
    ||||||||||||| |||||||||| |||||    
T  4469763 ttttctttggtggcacaaatttaatgagaa 4469734  T

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Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 206 - 288
Target Start/End: Complemental strand, 4469680 - 4469598
Alignment:
Q  206 atatggggatcggtgtttatattgccaaataaatagagaaaatagcactaccnnnnnnntagaaaacaaactatgatgtccat 288  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||    
T  4469680 atatggggttcggtgtttatattgccaaataaatagagaaaatagcactaccaaaaaaatagaaaacaaactatgatgtccat 4469598  T

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Target: chr7; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 206 - 288
Target Start/End: Original strand, 39669603 - 39669685
Alignment:
Q  206 atatggggatcggtgtttatattgccaaataaatagagaaaatagcactaccnnnnnnntagaaaacaaactatgatgtccat 288  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||       ||||||| ||||||||||||||||    
T  39669603 atatggggatcggtgtttatattgccaaataaatagaaaaaatagcactaccaaaaaaatagaaaataaactatgatgtccat 39669685  T

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Target: chr7; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 19 - 147
Target Start/End: Complemental strand, 38691179 - 38691057
Alignment:
Q  19 tatagagagagttgagagatgattagtttggcataaagtggcacatatgtagacagagttagtttggttacaaaagacaaacgttagatggggtttttct 118  Q
    |||| ||||||||||||||||||| ||||| ||||||||| |||| |||||||||||||||      |||| ||||||||||||||||| | |||||| |    
T  38691179 tatatagagagttgagagatgatttgtttgacataaagtgacacagatgtagacagagtta-----attaccaaagacaaacgttagat-gagttttttt 38691086  T
Q  119 tttctttggtggtacaaatttaaagagaa 147  Q
    |||||||| ||| |||||||||| |||||    
T  38691085 tttctttgttggcacaaatttaatgagaa 38691057  T

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Target: chr7; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 82
Target Start/End: Original strand, 39669443 - 39669506
Alignment:
Q  19 tatagagagagttgagagatgattagtttggcataaagtggcacatatgtagacagagttagtt 82  Q
    |||| ||||| |||| |||||||||||||| |||||||||||||||||||||||||||||||||    
T  39669443 tatatagagatttgaaagatgattagtttgacataaagtggcacatatgtagacagagttagtt 39669506  T

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Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 211 - 256
Target Start/End: Complemental strand, 38690997 - 38690952
Alignment:
Q  211 gggatcggtgtttatattgccaaataaatagagaaaatagcactac 256  Q
    |||||||||| |||||||||||||||||||||||||||| ||||||    
T  38690997 gggatcggtggttatattgccaaataaatagagaaaataacactac 38690952  T

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Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 206 - 250
Target Start/End: Complemental strand, 4468393 - 4468349
Alignment:
Q  206 atatggggatcggtgtttatattgccaaataaatagagaaaatag 250  Q
    |||||||||| | ||||||||||||||||||||||||||||||||    
T  4468393 atatggggattgatgtttatattgccaaataaatagagaaaatag 4468349  T

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Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 24 - 75
Target Start/End: Complemental strand, 4468577 - 4468526
Alignment:
Q  24 agagagttgagagatgattagtttggcataaagtggcacatatgtagacaga 75  Q
    ||||| |||||||| ||||| ||||||||||||||||||| |||||||||||    
T  4468577 agagatttgagagaggattactttggcataaagtggcacaaatgtagacaga 4468526  T

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Target: chr1 (Bit Score: 78; Significance: 2e-36; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 19 - 172
Target Start/End: Complemental strand, 20134016 - 20133868
Alignment:
Q  19 tatagagagagttgagagatgattagtttggcataaagtggcacatatgtagacagagttagtttggttacaaaagacaaacgttagatggggtttttct 118  Q
    |||| |||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||     || |||||||||||||||||| ||||||| |    
T  20134016 tatatagagagttgagaaatgattagtttggcataaagtggcacagatgtagacagagttagtt-----accaaagacaaacgttagatgaggttttttt 20133922  T
Q  119 tttctttggtggtacaaatttaaagagaannnnnnnnagcaaaagtttgtttag 172  Q
    |||||||||||| |||||||||| |||||        |||||||||||||||||    
T  20133921 tttctttggtggcacaaatttaatgagaaatttttttagcaaaagtttgtttag 20133868  T

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Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 206 - 288
Target Start/End: Complemental strand, 24523773 - 24523691
Alignment:
Q  206 atatggggatcggtgtttatattgccaaataaatagagaaaatagcactaccnnnnnnntagaaaacaaactatgatgtccat 288  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||| ||||||    
T  24523773 atatggggatcggtgtttatattgccaaataaatagagaaaatagcactaccaaaaaaatagaaaacaaactatgacgtccat 24523691  T

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Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 24523932 - 24523869
Alignment:
Q  19 tatagagagagttgagagatgattagtttggcataaagtggcacatatgtagacagagttagtt 82  Q
    |||| |||||||| |||||||||||||||| |||||| ||||||||||||||||||||||||||    
T  24523932 tatatagagagttaagagatgattagtttgacataaaatggcacatatgtagacagagttagtt 24523869  T

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Target: chr1; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 211 - 289
Target Start/End: Complemental strand, 20142209 - 20142132
Alignment:
Q  211 gggatcggtgtttatattgccaaataaatagagaaaatagcactaccnnnnnnntagaaaacaaactatgatgtccatc 289  Q
    |||||| ||||||||||||||||||||||||| ||||||||||||||       |||||||||||||||||||||||||    
T  20142209 gggatccgtgtttatattgccaaataaataga-aaaatagcactaccaaaaaaatagaaaacaaactatgatgtccatc 20142132  T

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Target: chr1; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 206 - 257
Target Start/End: Complemental strand, 20133838 - 20133787
Alignment:
Q  206 atatggggatcggtgtttatattgccaaataaatagagaaaatagcactacc 257  Q
    ||||||||||||||| ||||||| ||||||||||||||||||||||||||||    
T  20133838 atatggggatcggtgattatatttccaaataaatagagaaaatagcactacc 20133787  T

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Target: chr8 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 19 - 172
Target Start/End: Original strand, 6647846 - 6647995
Alignment:
Q  19 tatagagagagttgagagatgattagtttggcataaagtggcacatatgtagacagagttagtttggttacaaaagacaaacgttagatggggtttt-tc 117  Q
    |||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||     || ||||||||||||||||||  ||||| ||    
T  6647846 tatatagagagttgaaagatgattagtttggcataaagtggcacatatgtagacagagttagtt-----accaaagacaaacgttagatgatgttttttc 6647940  T
Q  118 ttttctttggtggtacaaatttaaagagaannnnnnnnagcaaaagtttgtttag 172  Q
    ||||||||||||| |||||||||| |||||        |||||||||||||||||    
T  6647941 ttttctttggtggcacaaatttaatgagaattttttttagcaaaagtttgtttag 6647995  T

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Target: chr8; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 206 - 288
Target Start/End: Original strand, 6648025 - 6648107
Alignment:
Q  206 atatggggatcggtgtttatattgccaaataaatagagaaaatagcactaccnnnnnnntagaaaacaaactatgatgtccat 288  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||    
T  6648025 atatggggatcggtgtttatattgccaaataaatagagaaaatagcactaccaaaaaaatagaaaacaaactatgatgtccat 6648107  T

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Target: chr6 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 24 - 147
Target Start/End: Complemental strand, 11144338 - 11144219
Alignment:
Q  24 agagagttgagagatgattagtttggcataaagtggcacatatgtagacagagttagtttggttacaaaagacaaacgttagatggggttttt-cttttc 122  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     || |||||||||||||||||| | ||||| ||||||    
T  11144338 agagagttgagagatgattagtttggcataaagtggcacatatgtagacagagttagtt-----accaaagacaaacgttagatgagattttttcttttc 11144244  T
Q  123 tttggtggtacaaatttaaagagaa 147  Q
    ||| |||||| |||||||| |||||    
T  11144243 tttagtggtataaatttaatgagaa 11144219  T

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Target: chr6; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 206 - 257
Target Start/End: Complemental strand, 11144157 - 11144106
Alignment:
Q  206 atatggggatcggtgtttatattgccaaataaatagagaaaatagcactacc 257  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11144157 atatggggatcggtgtttatattgccaaataaatagagaaaatagcactacc 11144106  T

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Target: chr2 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 19 - 147
Target Start/End: Original strand, 13859575 - 13859699
Alignment:
Q  19 tatagagagagttgagagatgattagtttggcataaagtggcacatatgtagacagagttagtttggttacaaaagacaaacgttagatg-gggtttttc 117  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||     ||||  |||||||||||||| ||| || ||||||    
T  13859575 tatatagagagttgagagatgattagtttggcataaagtggcacatatatagacagagtta-----gttatcaaagacaaacgttatatgaggttttttc 13859669  T
Q  118 ttttctttggtggtacaaatttaaagagaa 147  Q
    ||||||||||||| |||||||||| |||||    
T  13859670 ttttctttggtggcacaaatttaatgagaa 13859699  T

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Target: chr2; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 206 - 288
Target Start/End: Original strand, 13859754 - 13859836
Alignment:
Q  206 atatggggatcggtgtttatattgccaaataaatagagaaaatagcactaccnnnnnnntagaaaacaaactatgatgtccat 288  Q
    ||||||||||| ||||||||||||||||||||||| ||||||||||||||||       ||||||||||||||||||||||||    
T  13859754 atatggggatcagtgtttatattgccaaataaatatagaaaatagcactaccaaaaaaatagaaaacaaactatgatgtccat 13859836  T

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Target: scaffold0136 (Bit Score: 54; Significance: 5e-22; HSPs: 2)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 206 - 284
Target Start/End: Complemental strand, 40795 - 40717
Alignment:
Q  206 atatggggatcggtgtttatattgccaaataaatagagaaaatagcactaccnnnnnnntagaaaacaaactatgatgt 284  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||    
T  40795 atatgaggatcggtgtttatattgccaaataaatagagaaaatagcactaccaaaaaaatagaaaacaaactatgatgt 40717  T

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Target: scaffold0136; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 40951 - 40888
Alignment:
Q  19 tatagagagagttgagagatgattagtttggcataaagtggcacatatgtagacagagttagtt 82  Q
    |||| ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||    
T  40951 tatatagagagttgagagatgattagtttgacataaagtggcacatatgtagacaaagttagtt 40888  T

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Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 19 - 147
Target Start/End: Original strand, 7551350 - 7551472
Alignment:
Q  19 tatagagagagttgagagatgattagtttggcataaagtggcacatatgtagacagagttagtttggttacaaaagacaaacgttagatggggtttttct 118  Q
    |||| ||||||||||||||||||| ||||| ||||||||| |||| ||||||||||||||||||     || ||||||||||||||||||   ||||| |    
T  7551350 tatatagagagttgagagatgatttgtttgacataaagtgacacagatgtagacagagttagtt-----accaaagacaaacgttagatgatattttt-t 7551443  T
Q  119 tttctttggtggtacaaatttaaagagaa 147  Q
    |||||||| ||| |||||||||| |||||    
T  7551444 tttctttgttggcacaaatttaatgagaa 7551472  T

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Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 206 - 257
Target Start/End: Original strand, 7551530 - 7551581
Alignment:
Q  206 atatggggatcggtgtttatattgccaaataaatagagaaaatagcactacc 257  Q
    ||||||||||||||| |||||||||||||||||||||||||||| |||||||    
T  7551530 atatggggatcggtggttatattgccaaataaatagagaaaataacactacc 7551581  T

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Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 206 - 288
Target Start/End: Complemental strand, 3993376 - 3993294
Alignment:
Q  206 atatggggatcggtgtttatattgccaaataaatagagaaaatagcactaccnnnnnnntagaaaacaaactatgatgtccat 288  Q
    ||||||||||||||||||||||||| |||||||||||||||||||| ||||        ||||||||||||||||||||||||    
T  3993376 atatggggatcggtgtttatattgctaaataaatagagaaaatagcgctacgaaaaaaatagaaaacaaactatgatgtccat 3993294  T

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Target: scaffold0416 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0416
Description:

Target: scaffold0416; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 206 - 257
Target Start/End: Complemental strand, 4419 - 4368
Alignment:
Q  206 atatggggatcggtgtttatattgccaaataaatagagaaaatagcactacc 257  Q
    ||||||||||||||| |||||||||||||||||||||||||||| |||||||    
T  4419 atatggggatcggtggttatattgccaaataaatagagaaaataacactacc 4368  T

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