View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10954A_low_212 (Length: 295)
Name: NF10954A_low_212
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_212 |
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| [»] chr1 (1 HSPs) |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 20 - 295
Target Start/End: Complemental strand, 43001380 - 43001105
Alignment:
| Q |
20 |
catcactgaagcagcactcaaaatatcaagtgaagaaacattaacttcatggttccattttttacctgatgtcatcgagttagttttagctgcatatgac |
119 |
Q |
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| T |
43001380 |
catcactgaagcagcactcaaaatatcaagtgaagaaacattaacttcatgattccattttttacctgatgccatcaagttagttttagctgcatatgac |
43001281 |
T |
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| Q |
120 |
ttccctagcttaccaacatctttcctcttcagtttctcaaaacattcagatttgtgattcttgtagtagaactcaacgcagtctgcagttgtcttgtgat |
219 |
Q |
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| T |
43001280 |
ttccctagcttaccaatatctttcctcttcagtttctcaaaacattcggatttgtgattcttgtagtagaactcaatgcagtctgcagttgtcttgtgat |
43001181 |
T |
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| Q |
220 |
caaggaaagaagcaattttccggaaatcttttccaaatgcagcaaatttcttcaagaataactctttctcttctga |
295 |
Q |
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| T |
43001180 |
caaggaaagaagcaattttccggaaatcttttccaaatgcagcaaatttctccaagaatagttctttctcttctga |
43001105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 76; Significance: 4e-35; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 136 - 295
Target Start/End: Complemental strand, 10696264 - 10696105
Alignment:
| Q |
136 |
catctttcctcttcagtttctcaaaacattcagatttgtgattcttgtagtagaactcaacgcagtctgcagttgtcttgtgatcaaggaaagaagcaat |
235 |
Q |
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| T |
10696264 |
catctttcttcttgattttctcaaaacaatcagacttgtgatttttgtagtagaattccacacagtccgctgttgtcttgtggtcaaggaaagtagaaat |
10696165 |
T |
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| Q |
236 |
tttccggaaatcttttccaaatgcagcaaatttcttcaagaataactctttctcttctga |
295 |
Q |
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| T |
10696164 |
tttttgaaaatcttttccaaaggcagcaaatttctccaagaaaacctctttctcttctga |
10696105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 152 - 277
Target Start/End: Original strand, 10695368 - 10695493
Alignment:
| Q |
152 |
tttctcaaaacattcagatttgtgattcttgtagtagaactcaacgcagtctgcagttgtcttgtgatcaaggaaagaagcaattttccggaaatctttt |
251 |
Q |
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| T |
10695368 |
tttctcaaaacaatcagacttatgatttttgtattagaattcaacacagtctgctgttgtcttgtggtcaaggaaagtagaaatttttcgaaaatctttt |
10695467 |
T |
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| Q |
252 |
ccaaatgcagcaaatttcttcaagaa |
277 |
Q |
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| T |
10695468 |
ccaaaggccgcaaatttctccaagaa |
10695493 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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