View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10954A_low_214 (Length: 294)
Name: NF10954A_low_214
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_214 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 182; Significance: 2e-98; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 52 - 294
Target Start/End: Original strand, 38609304 - 38609548
Alignment:
| Q |
52 |
aacttatatttgcaataaacacaatgcaaacaagctttacaaagagacgatagagagatatcataggcacggtt-acaataatnnnnnnnnn-ttgaagt |
149 |
Q |
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| T |
38609304 |
aacttatatttgcaataaacacaatgcaaacaagctttacaaagagacgatagagagatatcataggcacggttgacaataataaaaaaaaaattgaagt |
38609403 |
T |
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| Q |
150 |
agcagaggatcctccacgactcacctgaccaagcccatgcccatttttgtggatctccgcatgtatttttgggccctgtgagacatgattagtgcattca |
249 |
Q |
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| T |
38609404 |
agcagatgatcctccatgactcacctgaccaagcccatgcccatttttgtggatctccgcatgtatttttgggccctgtgagacatgattagtgcattca |
38609503 |
T |
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| Q |
250 |
taaatgtaaaaaaggtaatatgacaaacaagttacatacgatatt |
294 |
Q |
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| T |
38609504 |
taaatgtaaaaaaggtatagtgacaaacaagttacatacgatatt |
38609548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 38609187 - 38609303
Alignment:
| Q |
1 |
tcattttattccttcgaaacatgttgtttaaatacaaattttgaagaaattaacttatatttgcaataaacacaatgcaaacaagctttacaaagagacg |
100 |
Q |
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| T |
38609187 |
tcattttattccttcggaacatgttgtttaaatacaaattttgaagaaattaacttatatttgcaataaacacaatgcaaacaagctttacaaagagacg |
38609286 |
T |
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| Q |
101 |
atagagagatatcatag |
117 |
Q |
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| T |
38609287 |
atagagagatatcatag |
38609303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 17 - 120
Target Start/End: Original strand, 38604167 - 38604270
Alignment:
| Q |
17 |
aaacatgttgtttaaatacaaattttgaagaaattaacttatatttgcaataaacacaatgcaaacaagctttacaaagagacgatagagagatatcata |
116 |
Q |
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| T |
38604167 |
aaacatgttgtctaattactagttttgaagaaattaaattatatctgcaattaacaaaatgcaaacaagtttcacagagagaggatagagagacatcata |
38604266 |
T |
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| Q |
117 |
ggca |
120 |
Q |
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|||| |
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| T |
38604267 |
ggca |
38604270 |
T |
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