View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10954A_low_216 (Length: 293)
Name: NF10954A_low_216
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_216 |
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Alignment Details
Target: chr7 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 287
Target Start/End: Complemental strand, 8156869 - 8156580
Alignment:
| Q |
1 |
tatagcctccatcaccacttaatacacgatttcctgagaccacggtgaaaattgaaagtgccatttgaagaaggttgtatgcaaacccaattactattgt |
100 |
Q |
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| T |
8156869 |
tatagcctccatcaccacttaatacacgatttcctgagaccacggtgaaaattgaaagtgccatttgaagaaggttgtatgcaaacccaattactattgt |
8156770 |
T |
|
| Q |
101 |
ggagatcatgtatctaca---tttaaataattgtaccaagttaataaagaatgaaagaatataactcttttttctatattagttcatttgaaccactgat |
197 |
Q |
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| T |
8156769 |
ggagatcatgtatctacaacatttaaataattgtaccaagttaataaagaatgaaagaatataactcttttttctatattagttcatttgaaccactgat |
8156670 |
T |
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| Q |
198 |
tttatcaataatttgtttgtagccatatatgataggattcattagtatatagaaggcctcttccattaaaaaagcacagtaaacacatcc |
287 |
Q |
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| T |
8156669 |
tttatcaataatttgtttgtagccatatatgataggattcattagtatatagaaggcctcttccattaaaaaagcacagtaaacacatcc |
8156580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 13 - 120
Target Start/End: Complemental strand, 8163195 - 8163088
Alignment:
| Q |
13 |
caccacttaatacacgatttcctgagaccacggtgaaaattgaaagtgccatttgaagaaggttgtatgcaaacccaattactattgtggagatcatgta |
112 |
Q |
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||||| ||||||||||||||||||| ||||| |||||||||||||||||||||| || ||||||||||||||||| |||||||| |||| |||||| |
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| T |
8163195 |
caccatttaatacacgatttcctgataccacactgaaaattgaaagtgccatttgtaggcaattgtatgcaaacccaatgactattgtcgagagcatgta |
8163096 |
T |
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| Q |
113 |
tctacatt |
120 |
Q |
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|||||||| |
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| T |
8163095 |
tctacatt |
8163088 |
T |
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