View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10954A_low_218 (Length: 292)
Name: NF10954A_low_218
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_218 |
 | |
|
| [»] chr6 (11 HSPs) |
| |
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| [»] scaffold0133 (3 HSPs) |
| |
|
| [»] chr3 (2 HSPs) |
| |
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| [»] scaffold0256 (1 HSPs) |
| | |
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| [»] scaffold0144 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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|
| [»] scaffold0230 (1 HSPs) |
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| [»] scaffold0511 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 285; Significance: 1e-160; HSPs: 11)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 4 - 292
Target Start/End: Original strand, 16787548 - 16787836
Alignment:
| Q |
4 |
atctgatttaacttcttgaaaaaatgacctttggtataattcattccatacctcattaccaacatcctccatctgtaagtttcctctagatgtaacaagt |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16787548 |
atctgatttaacttcttgaaaaaatgacctttggtataattcattccatacctcattaccaacatcctccatctgtaagtttcctctagatgtaacaagt |
16787647 |
T |
|
| Q |
104 |
ccattagccatccaaagatgaatgagattttccttcaccatttcaaaatccttgggaaaaacagcgcagaaggtaaaacatggcctcaaggacaatttca |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16787648 |
ccattagccatccaaagatgaatgagattttccttcaccatttcaaaatccttgggaaaaacagcgcagaaggtaaaacatggcctcaaggacaatttca |
16787747 |
T |
|
| Q |
204 |
agttaaagtagcttagtctcaaaacagacatgataggatcatcctcagttaaattccaaaactcactttccagtatagaaatccattga |
292 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
16787748 |
agttaaagtagcttagtctcaaaacagacatgataggatcatcctcagttaaattccaaaactcactttccagtacagaaatccattga |
16787836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 4 - 292
Target Start/End: Original strand, 16796750 - 16797038
Alignment:
| Q |
4 |
atctgatttaacttcttgaaaaaatgacctttggtataattcattccatacctcattaccaacatcctccatctgtaagtttcctctagatgtaacaagt |
103 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||| ||||| | |||||||||||| |||||||||||| || |||||||||||||||||| |
|
|
| T |
16796750 |
atctgatttgacttcttgaaaaaatgacctttggtataattcatcccatatcccattaccaacatgctccatctgtaaattacctctagatgtaacaagt |
16796849 |
T |
|
| Q |
104 |
ccattagccatccaaagatgaatgagattttccttcaccatttcaaaatccttgggaaaaacagcgcagaaggtaaaacatggcctcaaggacaatttca |
203 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||| |
|
|
| T |
16796850 |
ccattagccatccaaagatgaatgagatgttccttcaccatttcaaaatccttaggaaaaacagcgcagaaagtaaaacatggcctcaatgacaatttca |
16796949 |
T |
|
| Q |
204 |
agttaaagtagcttagtctcaaaacagacatgataggatcatcctcagttaaattccaaaactcactttccagtatagaaatccattga |
292 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||||| ||||| ||| || |||||||||||| ||||||||||||| ||||||||||||| |
|
|
| T |
16796950 |
agttaaagtagcttagtgtcaaagcagacatgatacgatcaacctgaggtaaattccaaaattcactttccagtacagaaatccattga |
16797038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 4 - 292
Target Start/End: Original strand, 16780680 - 16780968
Alignment:
| Q |
4 |
atctgatttaacttcttgaaaaaatgacctttggtataattcattccatacctcattaccaacatcctccatctgtaagtttcctctagatgtaacaagt |
103 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
16780680 |
atctgatttaacttcttgaaaaaatgacctttggtataattcattccatacctcattaccaacatgctccatctgtaagtttcctctagatgtaacaagt |
16780779 |
T |
|
| Q |
104 |
ccattagccatccaaagatgaatgagattttccttcaccatttcaaaatccttgggaaaaacagcgcagaaggtaaaacatggcctcaaggacaatttca |
203 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| || || |||||||| ||||| |||||||| |||| |
|
|
| T |
16780780 |
ccattagccatccaaagttgaatgagattttccttcaccatttcaaaatccttaggaaaaacagcacaaaaagtaaaacacggccttaaggacaaattca |
16780879 |
T |
|
| Q |
204 |
agttaaagtagcttagtctcaaaacagacatgataggatcatcctcagttaaattccaaaactcactttccagtatagaaatccattga |
292 |
Q |
| |
|
| ||||||||||||||||||||| ||||||||||||| | |||||||| ||| ||||||| |||||||||| || ||||| ||||||| |
|
|
| T |
16780880 |
aattaaagtagcttagtctcaaagcagacatgatagggttatcctcagataacttccaaagctcactttcctttacagaaagccattga |
16780968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 8 - 292
Target Start/End: Original strand, 16987039 - 16987323
Alignment:
| Q |
8 |
gatttaacttcttgaaaaaatgacctttggtataattcattccatacctcattaccaacatcctccatctgtaagtttcctctagatgtaacaagtccat |
107 |
Q |
| |
|
||||||||||||||||||||||| ||||| |||||| |||||||||||||| |||||||| |||||||||||| || |||||||||||||||||||||| |
|
|
| T |
16987039 |
gatttaacttcttgaaaaaatgatctttgccataattgattccatacctcatcaccaacatgctccatctgtaaattacctctagatgtaacaagtccat |
16987138 |
T |
|
| Q |
108 |
tagccatccaaagatgaatgagattttccttcaccatttcaaaatccttgggaaaaacagcgcagaaggtaaaacatggcctcaaggacaatttcaagtt |
207 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| | |||||||||| ||| |
|
|
| T |
16987139 |
tagccatccaaagatgaatgagatcttccttcaccatttcaaaatccttaggaaaaacagcacagaaggtaaaacatggccttagtgacaatttcatgtt |
16987238 |
T |
|
| Q |
208 |
aaagtagcttagtctcaaaacagacatgataggatcatcctcagttaaattccaaaactcactttccagtatagaaatccattga |
292 |
Q |
| |
|
|||||||||||||||||| |||| ||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||| |
|
|
| T |
16987239 |
gaagtagcttagtctcaaagcagaaatgataggatcatcctcaggtaaattccaaatctcactttccagtacagaaatccattga |
16987323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 4 - 292
Target Start/End: Original strand, 16657593 - 16657881
Alignment:
| Q |
4 |
atctgatttaacttcttgaaaaaatgacctttggtataattcattccatacctcattaccaacatcctccatctgtaagtttcctctagatgtaacaagt |
103 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |
|
|
| T |
16657593 |
atctgattcgacttcttgaaaaaatgacctttgatataattcattccatacctcattaccaacatgctccatctgtaagtttcctctagatataacaagt |
16657692 |
T |
|
| Q |
104 |
ccattagccatccaaagatgaatgagattttccttcaccatttcaaaatccttgggaaaaacagcgcagaaggtaaaacatggcctcaaggacaatttca |
203 |
Q |
| |
|
||||||||||||||||| | |||||| | |||||| |||||||||||||||| ||||||||||| || || ||||||||||||||||| |||||||||| |
|
|
| T |
16657693 |
ccattagccatccaaagtttaatgagttcttccttatccatttcaaaatccttaggaaaaacagcacaaaaagtaaaacatggcctcaatgacaatttca |
16657792 |
T |
|
| Q |
204 |
agttaaagtagcttagtctcaaaacagacatgataggatcatcctcagttaaattccaaaactcactttccagtatagaaatccattga |
292 |
Q |
| |
|
||||||||||||| ||||||||| ||||||||| | | | ||| |||| ||||||||||||||||||||||| | ||||||||||||| |
|
|
| T |
16657793 |
agttaaagtagctcagtctcaaagcagacatgacatggttatcatcagctaaattccaaaactcactttccaccacagaaatccattga |
16657881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 4 - 292
Target Start/End: Complemental strand, 16868580 - 16868292
Alignment:
| Q |
4 |
atctgatttaacttcttgaaaaaatgacctttggtataattcattccatacctcattaccaacatcctccatctgtaagtttcctctagatgtaacaagt |
103 |
Q |
| |
|
||||||||| | ||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
16868580 |
atctgatttgatttcttgaaaaaatgacctttgatataattcattccatacctcattaccaacatgctccatctgtaagtttcctctagatgtaacaagt |
16868481 |
T |
|
| Q |
104 |
ccattagccatccaaagatgaatgagattttccttcaccatttcaaaatccttgggaaaaacagcgcagaaggtaaaacatggcctcaaggacaatttca |
203 |
Q |
| |
|
||||||||||||||||| ||||||| | |||||| |||||||||||||||| ||||||||||| || || ||||||||||||||||| |||||||||| |
|
|
| T |
16868480 |
ccattagccatccaaagttgaatgaaaaattccttttccatttcaaaatccttaggaaaaacagcacaaaaagtaaaacatggcctcaatgacaatttca |
16868381 |
T |
|
| Q |
204 |
agttaaagtagcttagtctcaaaacagacatgataggatcatcctcagttaaattccaaaactcactttccagtatagaaatccattga |
292 |
Q |
| |
|
||||||||||||| ||||||||| ||||||||| | | | ||| || | ||||||||||||||||||||||| | |||| |||||||| |
|
|
| T |
16868380 |
agttaaagtagctcagtctcaaagcagacatgacatggttatcatctgctaaattccaaaactcactttccaccacagaagtccattga |
16868292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 4 - 292
Target Start/End: Original strand, 17069087 - 17069375
Alignment:
| Q |
4 |
atctgatttaacttcttgaaaaaatgacctttggtataattcattccatacctcattaccaacatcctccatctgtaagtttcctctagatgtaacaagt |
103 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||| || |||||||||||||||| | |
|
|
| T |
17069087 |
atctgatttgacttcttgaaaaaatgacctttggtataattcatcccatatctcattaccaacatgctccatctgtaaattacctctagatgtaacaaat |
17069186 |
T |
|
| Q |
104 |
ccattagccatccaaagatgaatgagattttccttcaccatttcaaaatccttgggaaaaacagcgcagaaggtaaaacatggcctcaaggacaatttca |
203 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||| |||||||||| ||||||||| | ||||| ||||||||||||||||| |||||||||| |
|
|
| T |
17069187 |
ccattagccatccaaagatgaatgagcctttccttcaccattacaaaatccttaggaaaaacaacacagaaagtaaaacatggcctcaatgacaatttca |
17069286 |
T |
|
| Q |
204 |
agttaaagtagcttagtctcaaaacagacatgataggatcatcctcagttaaattccaaaactcactttccagtatagaaatccattga |
292 |
Q |
| |
|
||||| ||||||||||||||||| ||||||||| ||| | || || ||||||||||||||||||||||| | ||||||||||||| |
|
|
| T |
17069287 |
agttatagtagcttagtctcaaagcagacatgacagggttctcatcgtctaaattccaaaactcactttccaccacagaaatccattga |
17069375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 14 - 201
Target Start/End: Original strand, 16843397 - 16843584
Alignment:
| Q |
14 |
acttcttgaaaaaatgacctttggtataattcattccatacctcattaccaacatcctccatctgtaagtttcctctagatgtaacaagtccattagcca |
113 |
Q |
| |
|
||||||||||||||||| || ||||||| ||||||||| |||||||| ||||| |||||||||| ||| |||||||| || | || || |||||| |||| |
|
|
| T |
16843397 |
acttcttgaaaaaatgatctctggtatagttcattccacacctcattgccaacctcctccatctctaaatttcctctggaggaaataaatccatttgcca |
16843496 |
T |
|
| Q |
114 |
tccaaagatgaatgagattttccttcaccatttcaaaatccttgggaaaaacagcgcagaaggtaaaacatggcctcaaggacaattt |
201 |
Q |
| |
|
||||||||||||| | || ||||||||||||| ||||||| || ||||| ||||| || || |||||||||||| |||| || ||||| |
|
|
| T |
16843497 |
tccaaagatgaattacatcttccttcaccattacaaaatctttaggaaatacagcacaaaatgtaaaacatggcttcaatgataattt |
16843584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 103 - 292
Target Start/End: Complemental strand, 18806677 - 18806488
Alignment:
| Q |
103 |
tccattagccatccaaagatgaatgagattttccttcaccatttcaaaatccttgggaaaaacagcgcagaaggtaaaacatggcctcaaggacaatttc |
202 |
Q |
| |
|
||||||||||| ||||||||| || || | |||||||||||||||||||||||| |||||||| || || || |||||||| |||||| || |||||| |
|
|
| T |
18806677 |
tccattagccaaccaaagatggatcagttcttccttcaccatttcaaaatccttaggaaaaaccgcacaaaaagtaaaacacagcctcagtgataatttc |
18806578 |
T |
|
| Q |
203 |
aagttaaagtagcttagtctcaaaacagacatgataggatcatcctcagttaaattccaaaactcactttccagtatagaaatccattga |
292 |
Q |
| |
|
|| ||||||||||| ||||||||||||||||||||||||| ||||| | ||| ||||||||| ||||||| || ||||| ||||||| |
|
|
| T |
18806577 |
aaattaaagtagctgagtctcaaaacagacatgataggattgtcctcggataagctccaaaacttactttcctttacagaaagccattga |
18806488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 103 - 292
Target Start/End: Complemental strand, 18873671 - 18873482
Alignment:
| Q |
103 |
tccattagccatccaaagatgaatgagattttccttcaccatttcaaaatccttgggaaaaacagcgcagaaggtaaaacatggcctcaaggacaatttc |
202 |
Q |
| |
|
||||||||||| ||||||||| || || | |||||||||||||||||||||||| |||||||| || || || |||||||| |||||| || |||||| |
|
|
| T |
18873671 |
tccattagccaaccaaagatggatcagttcttccttcaccatttcaaaatccttaggaaaaaccgcacaaaaagtaaaacacagcctcagtgataatttc |
18873572 |
T |
|
| Q |
203 |
aagttaaagtagcttagtctcaaaacagacatgataggatcatcctcagttaaattccaaaactcactttccagtatagaaatccattga |
292 |
Q |
| |
|
|| ||||||||||| |||||||| |||||||||||||||| ||||| | ||| ||||||||| ||||||| || ||||| ||||||| |
|
|
| T |
18873571 |
aaattaaagtagctgagtctcaatacagacatgataggattgtcctcggataagctccaaaacttactttcctttacagaaagccattga |
18873482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 14 - 183
Target Start/End: Complemental strand, 18870676 - 18870507
Alignment:
| Q |
14 |
acttcttgaaaaaatgacctttggtataattcattccatacctcattaccaacatcctccatctgtaagtttcctctagatgtaacaagtccattagcca |
113 |
Q |
| |
|
||||||||||||||||| || | |||||||||||||| || |||| |||||||| ||||| || ||| ||||| | || | | | |||||||| || |
|
|
| T |
18870676 |
acttcttgaaaaaatgatctctcatataattcattccacacttcatgaccaacatgctccacctctaaatttccaatggaagagatgaatccattagtca |
18870577 |
T |
|
| Q |
114 |
tccaaagatgaatgagattttccttcaccatttcaaaatccttgggaaaaacagcgcagaaggtaaaaca |
183 |
Q |
| |
|
||||||||| || || | |||||||||||||||||||||||| |||||||| | || ||||||||||| |
|
|
| T |
18870576 |
accaaagatggatcagttcttccttcaccatttcaaaatccttaggaaaaacctcacaaaaggtaaaaca |
18870507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0133 (Bit Score: 225; Significance: 1e-124; HSPs: 3)
Name: scaffold0133
Description:
Target: scaffold0133; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 4 - 292
Target Start/End: Original strand, 12430 - 12718
Alignment:
| Q |
4 |
atctgatttaacttcttgaaaaaatgacctttggtataattcattccatacctcattaccaacatcctccatctgtaagtttcctctagatgtaacaagt |
103 |
Q |
| |
|
||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
12430 |
atctgatttaacttcttcaaataatgacctttggtataattcattccatacctcattaccaacatgctccatctgtaagtttcctctagatgtaacaagt |
12529 |
T |
|
| Q |
104 |
ccattagccatccaaagatgaatgagattttccttcaccatttcaaaatccttgggaaaaacagcgcagaaggtaaaacatggcctcaaggacaatttca |
203 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||| |||| |||||||||||||| ||||| ||||||||||||||||| |||||||||| |
|
|
| T |
12530 |
ccattagccatccaaagttgaatgagattttccttcaccatttcataatctttgggaaaaacagcacagaaagtaaaacatggcctcaatgacaatttca |
12629 |
T |
|
| Q |
204 |
agttaaagtagcttagtctcaaaacagacatgataggatcatcctcagttaaattccaaaactcactttccagtatagaaatccattga |
292 |
Q |
| |
|
||||||| ||||||||||||||| ||||||||||||||||| |||||| |||| |||||||||||||||| |||| ||||||||||||| |
|
|
| T |
12630 |
agttaaaatagcttagtctcaaagcagacatgataggatcaacctcaggtaaactccaaaactcactttctagtacagaaatccattga |
12718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0133; HSP #2
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 8 - 292
Target Start/End: Original strand, 8092 - 8376
Alignment:
| Q |
8 |
gatttaacttcttgaaaaaatgacctttggtataattcattccatacctcattaccaacatcctccatctgtaagtttcctctagatgtaacaagtccat |
107 |
Q |
| |
|
||||||||||||||||||||||| ||||| | |||| |||||||||||||| |||||| | |||||||||||| |||||||||||||||||||| |||| |
|
|
| T |
8092 |
gatttaacttcttgaaaaaatgatctttgccacaattgattccatacctcatcaccaacgtgctccatctgtaaatttcctctagatgtaacaagaccat |
8191 |
T |
|
| Q |
108 |
tagccatccaaagatgaatgagattttccttcaccatttcaaaatccttgggaaaaacagcgcagaaggtaaaacatggcctcaaggacaatttcaagtt |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||| |||| ||||||||||| ||||| | ||||||||| ||||| |||||||||||||| |
|
|
| T |
8192 |
tagccatccaaagatgaatgagattttccttaaccatttcaaaacccttaggaaaaacagcacagaaagcaaaacatggtctcaatgacaatttcaagtt |
8291 |
T |
|
| Q |
208 |
aaagtagcttagtctcaaaacagacatgataggatcatcctcagttaaattccaaaactcactttccagtatagaaatccattga |
292 |
Q |
| |
|
||||||||||| ||||||| |||||||||||| |||| |||||| ||||||||||| ||||||||||||| ||||||||||||| |
|
|
| T |
8292 |
aaagtagcttattctcaaagcagacatgatagaatcaacctcaggcaaattccaaaattcactttccagtacagaaatccattga |
8376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0133; HSP #3
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 4 - 292
Target Start/End: Original strand, 17636 - 17924
Alignment:
| Q |
4 |
atctgatttaacttcttgaaaaaatgacctttggtataattcattccatacctcattaccaacatcctccatctgtaagtttcctctagatgtaacaagt |
103 |
Q |
| |
|
||||||||| ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| |
|
|
| T |
17636 |
atctgatttgacttcttgaaagaatgacctttggtttaattcattccatacctcattaccaacatgctccatctgtaagtttcctcttgatgtaacaagt |
17735 |
T |
|
| Q |
104 |
ccattagccatccaaagatgaatgagattttccttcaccatttcaaaatccttgggaaaaacagcgcagaaggtaaaacatggcctcaaggacaatttca |
203 |
Q |
| |
|
|||||||||||||||| |||||| ||||||||||||||||||||||||||| |||||||||| || || |||||||| |||||||||||| |||||| |
|
|
| T |
17736 |
ccattagccatccaaaatggaatgatattttccttcaccatttcaaaatccttaggaaaaacagtacaaaaagtaaaacagggcctcaaggacgatttca |
17835 |
T |
|
| Q |
204 |
agttaaagtagcttagtctcaaaacagacatgataggatcatcctcagttaaattccaaaactcactttccagtatagaaatccattga |
292 |
Q |
| |
|
| ||||||||||||||||||||| ||||||| ||||| | |||||||| ||||||||||| |||||||||| || ||||| ||||||| |
|
|
| T |
17836 |
aattaaagtagcttagtctcaaagcagacattatagggttatcctcagataaattccaaacctcactttcctttacagaaagccattga |
17924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 4 - 292
Target Start/End: Complemental strand, 38939939 - 38939651
Alignment:
| Q |
4 |
atctgatttaacttcttgaaaaaatgacctttggtataattcattccatacctcattaccaacatcctccatctgtaagtttcctctagatgtaacaagt |
103 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| |
|
|
| T |
38939939 |
atctgatttgacttcttgaaaaaatgacctttggtataattcattccatacctcattaccaacatgctccatctgtaagtttcctcttgatgtaacaagt |
38939840 |
T |
|
| Q |
104 |
ccattagccatccaaagatgaatgagattttccttcaccatttcaaaatccttgggaaaaacagcgcagaaggtaaaacatggcctcaaggacaatttca |
203 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| || || ||||||||||||||||||||||||||| |
|
|
| T |
38939839 |
ccattagccatccaaagttgaatgagattttccttcaccatttcaaaatccttaggaaaaacagcacaaaaattaaaacatggcctcaaggacaatttca |
38939740 |
T |
|
| Q |
204 |
agttaaagtagcttagtctcaaaacagacatgataggatcatcctcagttaaattccaaaactcactttccagtatagaaatccattga |
292 |
Q |
| |
|
| ||||||||||||||||||||| ||||||||||||| | |||||||| ||||||||||| |||||||||| || ||||| ||||||| |
|
|
| T |
38939739 |
aattaaagtagcttagtctcaaagcagacatgatagggttatcctcagataaattccaaagctcactttcctttacagaaaaccattga |
38939651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 2 - 292
Target Start/End: Complemental strand, 7053848 - 7053558
Alignment:
| Q |
2 |
atatctgatttaacttcttgaaaaaatgacctttggtataattcattccatacctcattaccaacatcctccatctgtaagtttcctctagatgtaacaa |
101 |
Q |
| |
|
||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| | |||||||||||| |||||||||||||||| || |
|
|
| T |
7053848 |
atatcagatttaacttcttgaaaaaatgatctttgatataattcattccatacctcattaccaagaagctccatctgtaaatttcctctagatgtaagaa |
7053749 |
T |
|
| Q |
102 |
gtccattagccatccaaagatgaatgagattttccttcaccatttcaaaatccttgggaaaaacagcgcagaaggtaaaacatggcctcaaggacaattt |
201 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||| || |||||||| |||||||||||||| || || | |||||| |||||||| | |||||| |
|
|
| T |
7053748 |
gtccattagccatccaaagatgaatgaggcattccttatgtatctcaaaatctttgggaaaaacagcacaaaaagaaaaacaaggcctcaatggcaattt |
7053649 |
T |
|
| Q |
202 |
caagttaaagtagcttagtctcaaaacagacatgataggatcatcctcagttaaattccaaaactcactttccagtatagaaatccattga |
292 |
Q |
| |
|
||| ||| ||||||| || |||||| |||||||||| |||| |||||||| |||||||||||||| |||||| |||||||| ||||||| |
|
|
| T |
7053648 |
caaattatagtagctcagcctcaaagcagacatgattggattatcctcagataaattccaaaacttgctttcctttatagaaagccattga |
7053558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0256 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: scaffold0256
Description:
Target: scaffold0256; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 8 - 274
Target Start/End: Original strand, 8736 - 9002
Alignment:
| Q |
8 |
gatttaacttcttgaaaaaatgacctttggtataattcattccatacctcattaccaacatcctccatctgtaagtttcctctagatgtaacaagtccat |
107 |
Q |
| |
|
||||| ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
8736 |
gatttgacttcttgaaagaatgacctttggtttaattcattccatacctcattaccaacatgctccatctgtaaatttcctctagatgtaacaagtccat |
8835 |
T |
|
| Q |
108 |
tagccatccaaagatgaatgagattttccttcaccatttcaaaatccttgggaaaaacagcgcagaaggtaaaacatggcctcaaggacaatttcaagtt |
207 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||| |||||| || ||||||||||| || || ||||||||||| ||||||||||||||||| || |
|
|
| T |
8836 |
tagccatccaaagttgaatgagattttccttcaccattttaaaatctttaggaaaaacagcacaaaaagtaaaacatggtctcaaggacaatttcaaatt |
8935 |
T |
|
| Q |
208 |
aaagtagcttagtctcaaaacagacatgataggatcatcctcagttaaattccaaaactcactttcc |
274 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
8936 |
aaagtagcttagtctcaaagcagacatgataggatcatcctcagttaaattccaaagctcactttcc |
9002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0144 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: scaffold0144
Description:
Target: scaffold0144; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 4 - 292
Target Start/End: Original strand, 37071 - 37359
Alignment:
| Q |
4 |
atctgatttaacttcttgaaaaaatgacctttggtataattcattccatacctcattaccaacatcctccatctgtaagtttcctctagatgtaacaagt |
103 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| |
|
|
| T |
37071 |
atctgattcgacttcttgaaaaaatgacctttgatataattcattccatacctcattaccaacatgctccatctgtaagtttcctctagatgcaacaagt |
37170 |
T |
|
| Q |
104 |
ccattagccatccaaagatgaatgagattttccttcaccatttcaaaatccttgggaaaaacagcgcagaaggtaaaacatggcctcaaggacaatttca |
203 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||| ||||||||| ||||||||||| || || ||||||||||||||||| |||||||||| |
|
|
| T |
37171 |
ccattagccatccaaagttgaatgagattttccttcaccattttaaaatccttaggaaaaacagcacaaaaagtaaaacatggcctcaatgacaatttca |
37270 |
T |
|
| Q |
204 |
agttaaagtagcttagtctcaaaacagacatgataggatcatcctcagttaaattccaaaactcactttccagtatagaaatccattga |
292 |
Q |
| |
|
||||||||||||| ||||||||| ||||||||| | | ||| |||| ||||||||||||||||||||||| | ||||||||||||| |
|
|
| T |
37271 |
agttaaagtagctcagtctcaaagcagacatgacttggttatcatcagctaaattccaaaactcactttccaccacagaaatccattga |
37359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 4 - 292
Target Start/End: Original strand, 13377673 - 13377960
Alignment:
| Q |
4 |
atctgatttaacttcttgaaaaaatgacctttggtataattcattccatacctcattaccaacatcctccatctgtaagtttcctctagatgtaacaagt |
103 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| |||| |||| |||||||||||||||||||| |||| | ||||||||||||||||||||||||||| |
|
|
| T |
13377673 |
atctgatttaacttcttgaaaaaatgatctttggcataactcatcccatacctcattaccaacatgctccgt-tgtaagtttcctctagatgtaacaagt |
13377771 |
T |
|
| Q |
104 |
ccattagccatccaaagatgaatgagattttccttcaccatttcaaaatccttgggaaaaacagcgcagaaggtaaaacatggcctcaaggacaatttca |
203 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| || || |||||||||||||||||||||||||||| |
|
|
| T |
13377772 |
ccattagccatccaaagtagaatgagattttccttcaccatttcaaaatccttaggaaaaacagcacaaaaagtaaaacatggcctcaaggacaatttca |
13377871 |
T |
|
| Q |
204 |
agttaaagtagcttagtctcaaaacagacatgataggatcatcctcagttaaattccaaaactcactttccagtatagaaatccattga |
292 |
Q |
| |
|
| ||||||||||||||||||||| ||||||||||||| | |||||||| ||||||||||| || ||||||| || ||||| ||||||| |
|
|
| T |
13377872 |
aattaaagtagcttagtctcaaagcagacatgatagggttatcctcagataaattccaaagcttactttcctttacagaaagccattga |
13377960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0230 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: scaffold0230
Description:
Target: scaffold0230; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 14 - 292
Target Start/End: Original strand, 4263 - 4541
Alignment:
| Q |
14 |
acttcttgaaaaaatgacctttggtataattcattccatacctcattaccaacatcctccatctgtaagtttcctctagatgtaacaagtccattagcca |
113 |
Q |
| |
|
||||||||||||||||| || |||||||||||||| || |||| |||||||| ||||| || ||| ||||| || | | | ||||||||||| |
|
|
| T |
4263 |
acttcttgaaaaaatgatctcgcatataattcattccacacttcatgaccaacatgctccacctctaaatttccaacggaagagatgaatccattagcca |
4362 |
T |
|
| Q |
114 |
tccaaagatgaatgagattttccttcaccatttcaaaatccttgggaaaaacagcgcagaaggtaaaacatggcctcaaggacaatttcaagttaaagta |
213 |
Q |
| |
|
||||||||| || || | |||||||||||||||||||||||| |||||||| || || || |||||||| ||||||| || ||||| || |||||||| |
|
|
| T |
4363 |
accaaagatggatcagttcttccttcaccatttcaaaatccttaggaaaaaccgcacaaaaagtaaaacacggcctcagtgataattttaaattaaagta |
4462 |
T |
|
| Q |
214 |
gcttagtctcaaaacagacatgataggatcatcctcagttaaattccaaaactcactttccagtatagaaatccattga |
292 |
Q |
| |
|
||| |||||||||||| |||||||||||| ||||| | ||| ||||||||| ||||||| || ||||| ||||||| |
|
|
| T |
4463 |
gctgagtctcaaaacaaacatgataggattgtcctcggataagctccaaaacttactttcctttacagaaagccattga |
4541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0511 (Bit Score: 74; Significance: 6e-34; HSPs: 1)
Name: scaffold0511
Description:
Target: scaffold0511; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 103 - 292
Target Start/End: Original strand, 9033 - 9222
Alignment:
| Q |
103 |
tccattagccatccaaagatgaatgagattttccttcaccatttcaaaatccttgggaaaaacagcgcagaaggtaaaacatggcctcaaggacaatttc |
202 |
Q |
| |
|
||||||||||| ||||||||| || || |||||||||||||||||||||||| |||||||| || || || |||||||| ||||||| || |||||| |
|
|
| T |
9033 |
tccattagccaaccaaagatggatcagtgcttccttcaccatttcaaaatccttaggaaaaaccgcacaaaaagtaaaacacggcctcagtgataatttc |
9132 |
T |
|
| Q |
203 |
aagttaaagtagcttagtctcaaaacagacatgataggatcatcctcagttaaattccaaaactcactttccagtatagaaatccattga |
292 |
Q |
| |
|
|| ||||||||||| ||||||||||||||||||||||||| ||||| | ||| ||||||||| ||| ||| || ||||| ||||||| |
|
|
| T |
9133 |
aaattaaagtagctgagtctcaaaacagacatgataggattgtcctcggataagctccaaaacttactgtcctttacagaaagccattga |
9222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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