View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10954A_low_221 (Length: 291)

Name: NF10954A_low_221
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10954A_low_221
NF10954A_low_221
[»] chr1 (4 HSPs)
chr1 (21-284)||(29467152-29467415)
chr1 (19-252)||(29452676-29452909)
chr1 (22-229)||(29423828-29424035)
chr1 (19-236)||(29442684-29442901)
[»] chr2 (10 HSPs)
chr2 (20-253)||(14550910-14551143)
chr2 (151-253)||(12005616-12005718)
chr2 (152-253)||(12018381-12018482)
chr2 (151-247)||(11986979-11987075)
chr2 (154-249)||(12012047-12012142)
chr2 (20-75)||(8572827-8572882)
chr2 (195-229)||(8579035-8579069)
chr2 (196-250)||(9365188-9365242)
chr2 (195-249)||(10336378-10336432)
chr2 (20-72)||(9292699-9292751)
[»] chr4 (1 HSPs)
chr4 (199-239)||(55718336-55718376)


Alignment Details
Target: chr1 (Bit Score: 256; Significance: 1e-142; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 21 - 284
Target Start/End: Original strand, 29467152 - 29467415
Alignment:
Q  21 aaattccctcaatcgtttcttaatccttcgacacaactccgatttctaccaaatcaacgatttctctaacctaaccacccgcattaaactcaatcttcct 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29467152 aaattccctcaatcgtttcttaatccttcgacacaactccgatttctaccaaatcaacgatttctctaacctaaccacccgcattaaactcaatcttcct 29467251  T
Q  121 ttcaaaatccccaacaacttcatctctctgttcggttcatgtaacggccttctctgcatttccaccaatgtcggaatcgctttctggaatcctaacatcc 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  29467252 ttcaaaatccccaacaacttcatctctctgttcggttcatgtaacggccttctctgcatttccatcaatgtcggaatcgctttctggaatcctaacatcc 29467351  T
Q  221 gtaaacatcagattattcctaatctccctattcaaactcctgctctttctaaacctaacaccat 284  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29467352 gtaaacatcggattattcctaatctccctattcaaactcctgctctttctaaacctaacaccat 29467415  T

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Target: chr1; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 19 - 252
Target Start/End: Original strand, 29452676 - 29452909
Alignment:
Q  19 caaaattccctcaatcgtttcttaatccttcgacacaactccgatttctaccaaatcaacgatttctctaacctaaccacccgcattaaactcaatcttc 118  Q
    ||||||||||||||||||| ||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29452676 caaaattccctcaatcgttccttaatccttcgacacaactctgttttctaccaaatcaacgatttctctaacctaaccacccgcattaaactcaatcttc 29452775  T
Q  119 ctttcaaaatccccaacaacttcatctctctgttcggttcatgtaacggccttctctgcatttccaccaatgtcggaatcgctttctggaatcctaacat 218  Q
    |||||||| |||||||||||  ||||||||||||| ||||||||||||||||||||| |||| |||||||||||||||||||||||||||| ||||||||    
T  29452776 ctttcaaactccccaacaacaacatctctctgttcagttcatgtaacggccttctcttcattaccaccaatgtcggaatcgctttctggaaccctaacat 29452875  T
Q  219 ccgtaaacatcagattattcctaatctccctatt 252  Q
    |||||||||||||| |||||||||||||||||||    
T  29452876 ccgtaaacatcagaatattcctaatctccctatt 29452909  T

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Target: chr1; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 22 - 229
Target Start/End: Complemental strand, 29424035 - 29423828
Alignment:
Q  22 aattccctcaatcgtttcttaatccttcgacacaactccgatttctaccaaatcaacgatttctctaacctaaccacccgcattaaactcaatcttcctt 121  Q
    |||||| ||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||  | |||||||||||| |||||    
T  29424035 aattccttcaatcgttccttaatccttcgacacaactctgatttctaccaaatcaacgatttctctaacctaactaccgccgttaaactcaatcctcctt 29423936  T
Q  122 tcaaaatccccaacaacttcatctctctgttcggttcatgtaacggccttctctgcatttccaccaatgtcggaatcgctttctggaatcctaacatccg 221  Q
    |||||  | |||||||||||||||||||| |||| ||||||||||||||||||||| | | | || |||  | ||||||||||||||| |||| |||| |    
T  29423935 tcaaaggctccaacaacttcatctctctggtcggatcatgtaacggccttctctgcctcttctccgatggtgaaatcgctttctggaaccctaccatctg 29423836  T
Q  222 taaacatc 229  Q
    ||||||||    
T  29423835 taaacatc 29423828  T

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Target: chr1; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 19 - 236
Target Start/End: Original strand, 29442684 - 29442901
Alignment:
Q  19 caaaattccctcaatcgtttcttaatccttcgacacaactccgatttctaccaaatcaacgatttctctaacctaaccacccgcattaaactcaatcttc 118  Q
    ||||||| ||||||||||| ||||||||||||||||||||  ||||||||||||||| | ||||||||||||||||||||| || ||||||||||  |||    
T  29442684 caaaatttcctcaatcgttccttaatccttcgacacaactttgatttctaccaaatcgaagatttctctaacctaaccaccggcgttaaactcaacattc 29442783  T
Q  119 ctttcaaaatccccaacaacttcatctctctgttcggttcatgtaacggccttctctgcatttccaccaatgtcggaatcgctttctggaatcctaacat 218  Q
    |||||| |   |||| ||||  ||| |||||  | |||||||||||||||||||||||||||||| ||||||  ||||||||||||||||| ||||||||    
T  29442784 ctttcacaggtcccatcaaccgcatgtctcttctaggttcatgtaacggccttctctgcatttcctccaatgctggaatcgctttctggaaccctaacat 29442883  T
Q  219 ccgtaaacatcagattat 236  Q
    ||||||||| | ||||||    
T  29442884 ccgtaaacaccggattat 29442901  T

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Target: chr2 (Bit Score: 130; Significance: 2e-67; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 20 - 253
Target Start/End: Complemental strand, 14551143 - 14550910
Alignment:
Q  20 aaaattccctcaatcgtttcttaatccttcgacacaactccgatttctaccaaatcaacgatttctctaacctaaccacccgcattaaactcaatcttcc 119  Q
    |||||||||||||| ||| |||||||||||||||||| ||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14551143 aaaattccctcaattgttccttaatccttcgacacaagtccaatctctaccaaatcaacgatttctctaacctaaccacccgcattaaactcaatcttcc 14551044  T
Q  120 tttcaaaatccccaacaacttcatctctctgttcggttcatgtaacggccttctctgcatttccaccaatgtcggaatcgctttctggaatcctaacatc 219  Q
    |||| ||  |  ||||||||||||||||||| |||||||||||||||| ||||||| ||| |   |||||| || ||| ||||| ||||| |||||||||    
T  14551043 tttcgaaggcttcaacaacttcatctctctgctcggttcatgtaacggtcttctctacatcttttccaatggcgaaattgctttatggaaccctaacatc 14550944  T
Q  220 cgtaaacatcagattattcctaatctccctattc 253  Q
    ||||||||||  ||||| ||| ||||||||||||    
T  14550943 cgtaaacatcgcattatccctgatctccctattc 14550910  T

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Target: chr2; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 151 - 253
Target Start/End: Original strand, 12005616 - 12005718
Alignment:
Q  151 ttcggttcatgtaacggccttctctgcatttccaccaatgtcggaatcgctttctggaatcctaacatccgtaaacatcagattattcctaatctcccta 250  Q
    |||||||||||||||||||| |||||||||||| |||| | || |||| |||||||||| ||||||||||||||||||| |||||| |||||||||||||    
T  12005616 ttcggttcatgtaacggcctcctctgcatttcctccaaagccgaaatcactttctggaaccctaacatccgtaaacatcggattatccctaatctcccta 12005715  T
Q  251 ttc 253  Q
    |||    
T  12005716 ttc 12005718  T

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Target: chr2; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 152 - 253
Target Start/End: Original strand, 12018381 - 12018482
Alignment:
Q  152 tcggttcatgtaacggccttctctgcatttccaccaatgtcggaatcgctttctggaatcctaacatccgtaaacatcagattattcctaatctccctat 251  Q
    ||||||||||||||||||| |||||||||||| ||||   || ||||||||||||||| ||| ||||||||||||||| |||||| ||| ||||||||||    
T  12018381 tcggttcatgtaacggcctcctctgcatttcctccaacaacgaaatcgctttctggaacccttacatccgtaaacatcggattatccctcatctccctat 12018480  T
Q  252 tc 253  Q
    ||    
T  12018481 tc 12018482  T

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Target: chr2; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 151 - 247
Target Start/End: Original strand, 11986979 - 11987075
Alignment:
Q  151 ttcggttcatgtaacggccttctctgcatttccaccaatgtcggaatcgctttctggaatcctaacatccgtaaacatcagattattcctaatctcc 247  Q
    |||||||||||||||||||| |||||||||||| ||||   || ||||||||||||||| ||||||| ||||||||||| |||||| ||| ||||||    
T  11986979 ttcggttcatgtaacggcctcctctgcatttcctccaacaacgaaatcgctttctggaaccctaacacccgtaaacatcggattatccctcatctcc 11987075  T

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Target: chr2; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 154 - 249
Target Start/End: Original strand, 12012047 - 12012142
Alignment:
Q  154 ggttcatgtaacggccttctctgcatttccaccaatgtcggaatcgctttctggaatcctaacatccgtaaacatcagattattcctaatctccct 249  Q
    |||||||||||||||||  ||||||||||| | ||   || || ||| |||||||| |||||||||||||||||||||||||| ||||||||||||    
T  12012047 ggttcatgtaacggcctcatctgcatttcctcaaacaccgaaaccgcgttctggaaccctaacatccgtaaacatcagattatccctaatctccct 12012142  T

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Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 20 - 75
Target Start/End: Original strand, 8572827 - 8572882
Alignment:
Q  20 aaaattccctcaatcgtttcttaatccttcgacacaactccgatttctaccaaatc 75  Q
    |||||||||||||||||| ||||||| |||||| ||||| |||| |||||||||||    
T  8572827 aaaattccctcaatcgttccttaatcattcgacgcaactacgatatctaccaaatc 8572882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 195 - 229
Target Start/End: Original strand, 8579035 - 8579069
Alignment:
Q  195 aatcgctttctggaatcctaacatccgtaaacatc 229  Q
    ||||||||||||||| |||||||||||||||||||    
T  8579035 aatcgctttctggaaccctaacatccgtaaacatc 8579069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 196 - 250
Target Start/End: Complemental strand, 9365242 - 9365188
Alignment:
Q  196 atcgctttctggaatcctaacatccgtaaacatcagattattcctaatctcccta 250  Q
    |||||||||||||| ||||||||||||||||||| ||| || ||| |||| ||||    
T  9365242 atcgctttctggaaccctaacatccgtaaacatcggatcatcccttatcttccta 9365188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 195 - 249
Target Start/End: Complemental strand, 10336432 - 10336378
Alignment:
Q  195 aatcgctttctggaatcctaacatccgtaaacatcagattattcctaatctccct 249  Q
    |||||| ||||| ||||||| |||||||||||||| |||||| ||| ||||||||    
T  10336432 aatcgcattctgtaatcctaccatccgtaaacatcggattatcccttatctccct 10336378  T

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Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 72
Target Start/End: Complemental strand, 9292751 - 9292699
Alignment:
Q  20 aaaattccctcaatcgtttcttaatccttcgacacaactccgatttctaccaa 72  Q
    ||||||||||||| || | |||||||||||||||||| | |||| ||||||||    
T  9292751 aaaattccctcaaccgatccttaatccttcgacacaaattcgatctctaccaa 9292699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 239
Target Start/End: Complemental strand, 55718376 - 55718336
Alignment:
Q  199 gctttctggaatcctaacatccgtaaacatcagattattcc 239  Q
    ||||||||||||||||  ||||||||||||| |||||||||    
T  55718376 gctttctggaatcctacgatccgtaaacatcggattattcc 55718336  T

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