View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10954A_low_228 (Length: 289)
Name: NF10954A_low_228
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_228 |
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| [»] chr1 (3 HSPs) |
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| [»] scaffold0432 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 231; Significance: 1e-127; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 15 - 289
Target Start/End: Complemental strand, 9805338 - 9805064
Alignment:
| Q |
15 |
atcattgaacaggataagatggaaggtatttcatgtactcgcgaaaagggagaatcaaggtatattgtgatttttgttttattcggttattaaaatatgt |
114 |
Q |
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| T |
9805338 |
atcattgaacaggacaagatggaaggtatttcatgtactcgcgaaaagggagaatcaaggtatattgtgattttttttttattcggttattaaaatatgt |
9805239 |
T |
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| Q |
115 |
acttgtatttgttatttgctatttacttctagtacacattttatcttaaatttttgtacacataaatgcatcaaagggaaaaggaattcttgttgaacaa |
214 |
Q |
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| T |
9805238 |
acttgtatttgttattttctatttacttctagtacacattttatattaaatttttgtacataggaatgcatcaaagggaaaaggaattcttgttgaacaa |
9805139 |
T |
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| Q |
215 |
aatgaaaagcaccagtgatgagcaggaagactcttccccaaaagtaagatggggaatttgaagagtataagaaat |
289 |
Q |
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| T |
9805138 |
aatgaaaagcactggtgatgaggaggaagactcttccccaaaggtaagatggggaatttgaagagtataagaaat |
9805064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 71 - 281
Target Start/End: Complemental strand, 9818211 - 9817999
Alignment:
| Q |
71 |
aaggtatattgtgattt--ttgttttattcggttattaaaatatgtacttgtatttgttatttgctatttacttctagtacacattttatcttaaatttt |
168 |
Q |
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| T |
9818211 |
aaggtatattgtgatttattttttttatacggttattaaattatgtacttgtatttgttattttctatttacttctagtacacaatttatattaaatttt |
9818112 |
T |
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| Q |
169 |
tgtacacataaatgcatcaaagggaaaaggaattcttgttgaacaaaatgaaaagcaccagtgatgagcaggaagactcttccccaaaagtaagatgggg |
268 |
Q |
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| T |
9818111 |
tgtacacaagaatgcatcaaagggaaaaggaattcttgttgaacaaaatgaaaagcactagtgatgaggaggaagactcttccccaaaggtaagatgggg |
9818012 |
T |
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| Q |
269 |
aatttgaagagta |
281 |
Q |
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| T |
9818011 |
aatttgaagagta |
9817999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 15 - 281
Target Start/End: Original strand, 9806458 - 9806718
Alignment:
| Q |
15 |
atcattgaacaggataagatggaaggtatttcatgtactcgcgaaaagggagaatcaaggtatattgtgatt--tttgttttattcggttattaaaatat |
112 |
Q |
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||||||||||| || |||||||||||||||||| || ||| ||||||||||||||||||||||||||||||| ||| ||||| | ||||||| |||||| |
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| T |
9806458 |
atcattgaacaagacaagatggaaggtatttcacgtgctcacgaaaagggagaatcaaggtatattgtgatttatttattttagttggttattcaaatat |
9806557 |
T |
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| Q |
113 |
gtacttgtatttgttatttgctatttacttctagtacacattttatcttaaatttttgtacacataaatgcatcaaagggaaaaggaattcttgttgaac |
212 |
Q |
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| T |
9806558 |
gtacttgtgtttgttattttctatttgtttctaatacacattttatatttaatttttgtacac------------aagggaaaaggaattattgttgaac |
9806645 |
T |
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| Q |
213 |
aaaatgaaaag-----caccagtgatgagcaggaagactcttccccaaaagtaagatggggaatttgaagagta |
281 |
Q |
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| T |
9806646 |
aaaatgaagaggaggccactatagaagaggaggaagactatt-cccgaaagtaaggtggggaatttgaagagta |
9806718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0432 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: scaffold0432
Description:
Target: scaffold0432; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 9 - 281
Target Start/End: Complemental strand, 12285 - 12009
Alignment:
| Q |
9 |
atggatatcattgaacaggataagatggaaggtatttcatgtactcgcgaaaagggagaatcaaggtatattgtgattt-ttgttttattcggttattaa |
107 |
Q |
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| T |
12285 |
atggacatcattgatcatgacaagatggaaggtattccatgtactcatgaaaagggggaatcaacgtattttgtgatttatttttttagttggttattca |
12186 |
T |
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| Q |
108 |
aatatgtacttgtatttgttatttgctatttacttctagtacacattttatcttaaatttttgtacacataaatgcatcaaagggaaaaggaattcttgt |
207 |
Q |
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| T |
12185 |
attatgtacttatgtttgttattttatatttacttctagtac-cattttatattaaattttggtacacgataatgcagcgaagggagaaggaattcttgt |
12087 |
T |
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| Q |
208 |
tgaacaaaatgaaaag-----caccagtgatgagcaggaagactcttccccaaaagtaagatggggaatttgaagagta |
281 |
Q |
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| T |
12086 |
tgaacaaaatgaaaaggatgccactagtgataacgaggaagactctt-ccctaaagtaagatggggaatttgaagagta |
12009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 37 - 128
Target Start/End: Complemental strand, 2371144 - 2371052
Alignment:
| Q |
37 |
aaggtatttcatgtactcgcgaaaagggagaatcaaggtatattgtgattt-ttgttttattcggttattaaaatatgtacttgtatttgtta |
128 |
Q |
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| T |
2371144 |
aaggtattccatgtactcgtgaaaaaggagaatcaaggtatattgtgatttatttttttagtcgattattcaaatatatacttatgtttgtta |
2371052 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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