View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10954A_low_237 (Length: 287)
Name: NF10954A_low_237
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_237 |
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Alignment Details
Target: chr3 (Bit Score: 257; Significance: 1e-143; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 6 - 282
Target Start/End: Complemental strand, 53513817 - 53513541
Alignment:
| Q |
6 |
gaaggtggtgagactgtatttcctgatgctaagcccaactttacttctgtatcaaaatgttctggagatggtctatcagtgaaaccaaaaatgggcgacg |
105 |
Q |
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| T |
53513817 |
gaaggtggtgagactgtatttcctgatgctcagcccaactttacttctgtatccaaatgttctggagatggtctatcagtgaaaccaaaaatgggcgacg |
53513718 |
T |
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| Q |
106 |
ctctgctgttttggagcatgaagccagatggcacactagatacttctagtttacacggttagaaactattaaaaactgtaaatggttcaaccctaaaata |
205 |
Q |
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| T |
53513717 |
ctctgctgttttggagcatgaagccagatggcacactagatacttctagtttacacggttagaaattattaaaaactgtaaatggttcaaccctaaaata |
53513618 |
T |
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| Q |
206 |
tgcatatatgctctattaaaaacaatcaattgattaatcagttggatccaaatatatattttcttaatgttgaatgt |
282 |
Q |
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| T |
53513617 |
tgcatatatactctattaaaaacaatcaatagattaatcagttggatccaaatatatattttcttaatgttgaatgt |
53513541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 6 - 260
Target Start/End: Complemental strand, 53510208 - 53509954
Alignment:
| Q |
6 |
gaaggtggtgagactgtatttcctgatgctaagcccaactttacttctgtatcaaaatgttctggagatggtctatcagtgaaaccaaaaatgggcgacg |
105 |
Q |
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| T |
53510208 |
gaaggtggtgagactgtatttcctaatgctaagcctaacataaattctgtatccaaatatcctgaaaagggtctatcagtgaaaccaaaaatgggtgatg |
53510109 |
T |
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| Q |
106 |
ctctgctgttttggagcatgaagccagatggcacactagatacttctagtttacacggttagaaactattaaaaactgtaaatggttcaaccctaaaata |
205 |
Q |
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| T |
53510108 |
ctctgctgtttcggagcatgaagccagatggcacacttgatacttctagtttacacggttagaatctattaaaaaccgcaactcgttcaactgtaaaata |
53510009 |
T |
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| Q |
206 |
tgcatatatgctctattaaaaacaatcaattgattaatcagttggatccaaatat |
260 |
Q |
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| T |
53510008 |
tgtatacattctctattaaacacaatctatagattaatgagttggatctaaatat |
53509954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 6 - 172
Target Start/End: Complemental strand, 53524117 - 53523948
Alignment:
| Q |
6 |
gaaggtggtgagactgtatttcctgatgctaagcccaactttacttctgtatcaaaatgtt---ctggagatggtctatcagtgaaaccaaaaatgggcg |
102 |
Q |
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| T |
53524117 |
gaaggtggtgagactgtatttcctaatgctaagcccaactttaattctgtatccaaatatcatcctggaaagggtttagtagtgaaaccgaaaatgggcg |
53524018 |
T |
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| Q |
103 |
acgctctgctgttttggagcatgaagccagatggcacactagatacttctagtttacacggttagaaact |
172 |
Q |
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| T |
53524017 |
atgctctgctgttttggagcgttaagccagatggctcactagatacagctagcttacatggttagaaact |
53523948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 75 - 194
Target Start/End: Complemental strand, 53547659 - 53547540
Alignment:
| Q |
75 |
ggtctatcagtgaaaccaaaaatgggcgacgctctgctgttttggagcatgaagccagatggcacactagatacttctagtttacacggttagaaactat |
174 |
Q |
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| T |
53547659 |
ggtctatcactgaaaccaaaaatgggtgatgctctgctgttttggagcatgaggccagatgccacactagatgcatccagtttacacggttagggactat |
53547560 |
T |
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| Q |
175 |
taaaaactgtaaatggttca |
194 |
Q |
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| T |
53547559 |
taaatactttaactggttca |
53547540 |
T |
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