View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10954A_low_240 (Length: 286)
Name: NF10954A_low_240
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_240 |
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Alignment Details
Target: chr2 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 4 - 280
Target Start/End: Complemental strand, 25545408 - 25545132
Alignment:
| Q |
4 |
atgagggatgaagagttgtatctgcgacttatggaattaacataagggtatgcaaagagttgtagactccttggcatatcattcaaggaacacaaatctt |
103 |
Q |
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| T |
25545408 |
atgagggattaagagttgtatctgcgacttatggaattaacataagggtatgcaaagagttgtagactccttggcatatcattcaaggaacacaaatctt |
25545309 |
T |
|
| Q |
104 |
tagaaagtaatcaatactatcaccaagagctagttagaatccacagcttgttctacgcaaactgcaaagtaaaactccgatggttaacccgacaaaagac |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25545308 |
tagaaagtaatcaatactatcaccaagagctagttagaatccacagcttgttctccgcaaactgcaaagtaaaactccgatggttaacccgacaaaagac |
25545209 |
T |
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| Q |
204 |
caaatggcagcaagaatatgagagagcagcagatacacagaaaaggaaccgaaggaatcaatggcataatccaactc |
280 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25545208 |
caaatggcagcaagaatatgagagagcagcaggtacacagaaaaggaaccgaaggaatcaatggcataatccaactc |
25545132 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 166 - 278
Target Start/End: Original strand, 1154496 - 1154608
Alignment:
| Q |
166 |
tgcaaagtaaaactccgatggttaacccgacaaaagaccaaatggcagcaagaatatgagagagcagcagatacacagaaaaggaaccgaaggaatcaat |
265 |
Q |
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||||||||||||||||||||||||||| | |||||||||||| |||||||||||||||| ||||||| || ||||||||||||||||||||||||| ||| |
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| T |
1154496 |
tgcaaagtaaaactccgatggttaacctggcaaaagaccaaacggcagcaagaatatgatagagcagtagttacacagaaaaggaaccgaaggaattaat |
1154595 |
T |
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| Q |
266 |
ggcataatccaac |
278 |
Q |
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| T |
1154596 |
ggcataatccaac |
1154608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 160 - 199
Target Start/End: Complemental strand, 1155160 - 1155121
Alignment:
| Q |
160 |
gcaaactgcaaagtaaaactccgatggttaacccgacaaa |
199 |
Q |
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||||||||||||||||||||||||| ||||||||| |||| |
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| T |
1155160 |
gcaaactgcaaagtaaaactccgatagttaacccggcaaa |
1155121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 4 - 64
Target Start/End: Complemental strand, 38041466 - 38041406
Alignment:
| Q |
4 |
atgagggatgaagagttgtatctgcgacttatggaattaacataagggtatgcaaagagtt |
64 |
Q |
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|||||||| ||||||||||||| || |||| ||||||||||| | |||||||||||||||| |
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| T |
38041466 |
atgagggacgaagagttgtatccgcaacttctggaattaacagaggggtatgcaaagagtt |
38041406 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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