View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10954A_low_246 (Length: 284)

Name: NF10954A_low_246
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10954A_low_246
NF10954A_low_246
[»] scaffold0083 (2 HSPs)
scaffold0083 (122-284)||(50805-50967)
scaffold0083 (1-91)||(50705-50795)
[»] chr5 (2 HSPs)
chr5 (123-280)||(26793328-26793486)
chr5 (146-280)||(26818844-26818979)
[»] chr3 (19 HSPs)
chr3 (123-280)||(10214745-10214903)
chr3 (123-280)||(10223486-10223644)
chr3 (124-280)||(10103809-10103966)
chr3 (134-246)||(10123644-10123755)
chr3 (134-246)||(10180298-10180409)
chr3 (134-246)||(10256413-10256524)
chr3 (1-165)||(11768325-11768494)
chr3 (1-72)||(10076299-10076370)
chr3 (134-186)||(10028802-10028854)
chr3 (1-80)||(10031125-10031204)
chr3 (1-86)||(9838029-9838114)
chr3 (1-86)||(9848907-9848992)
chr3 (1-86)||(9837824-9837907)
chr3 (1-86)||(9848702-9848785)
chr3 (1-86)||(10126060-10126145)
chr3 (1-80)||(10657930-10658006)
chr3 (1-86)||(10662639-10662721)
chr3 (1-62)||(10104042-10104100)
chr3 (36-80)||(10516630-10516674)


Alignment Details
Target: scaffold0083 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 122 - 284
Target Start/End: Original strand, 50805 - 50967
Alignment:
Q  122 attatatatatttttacttttggtaagtgattcaaatatgcaatttctagttaaagtcctctcatatactaaaataaatgtatcatgttgtcatttttct 221  Q
    |||||||| |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||    
T  50805 attatatacatttttacttttggaaagtgattcaaatatgcaatttctagttaaactcctctcatatacgaaaataaatgtatcatgttgtcatttttct 50904  T
Q  222 tatcatctgtgttcaaaattaaaaacaatgtactagagattatgtcgataacttttctactga 284  Q
    ||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| ||||||    
T  50905 tatcatctgtgttcaaaattaaaaataatgtactagagattatgttgataacttttttactga 50967  T

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Target: scaffold0083; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 50705 - 50795
Alignment:
Q  1 aaagctggaaagcaaggctcagcagtggttaatattggaccgacatcttacaaaataattgatacaatgaaaaaggaaaaattgcagtcac 91  Q
    ||||||||||||||| ||||||||||||||||||||||||| |||||  |||||||||||||||||| |||||||||||||||||||||||    
T  50705 aaagctggaaagcaaagctcagcagtggttaatattggacccacatcccacaaaataattgatacaaagaaaaaggaaaaattgcagtcac 50795  T

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Target: chr5 (Bit Score: 95; Significance: 2e-46; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 123 - 280
Target Start/End: Complemental strand, 26793486 - 26793328
Alignment:
Q  123 ttatatatatttttacttttggtaagtgattcaaatatgcaatttctagttaaagtcctctcatatactaaaa-taaatgtatcatgttgtcatttttct 221  Q
    ||||||| |||||||| || || |||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||    
T  26793486 ttatatacatttttaccttaggaaagtgagtcaaatatgcaatttctagttaaagtcctctcatatactaaaaataaatgtatcatattgtcatttttct 26793387  T
Q  222 tatcatctgtgttcaaaattaaaaacaatgtactagagattatgtcgataacttttcta 280  Q
    ||||| ||||||| ||| ||||||| ||| |||||||||||| || |||||| ||||||    
T  26793386 tatcacctgtgttaaaatttaaaaataatttactagagattacgttgataacctttcta 26793328  T

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Target: chr5; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 146 - 280
Target Start/End: Complemental strand, 26818979 - 26818844
Alignment:
Q  146 aagtgattcaaatatgcaatttctagttaaagtcctctcatatactaaaa-taaatgtatcatgttgtcatttttcttatcatctgtgttcaaaattaaa 244  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| ||||||| ||| |||||    
T  26818979 aagtgagtcaaatatgcaatttctagttaaagtcctctcatatactaaaaataaatgtatcatattgtcatttttcttatcacctgtgttaaaatttaaa 26818880  T
Q  245 aacaatgtactagagattatgtcgataacttttcta 280  Q
    || ||| |||||||||||| || |||||| ||||||    
T  26818879 aataatttactagagattacgttgataacctttcta 26818844  T

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Target: chr3 (Bit Score: 95; Significance: 2e-46; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 123 - 280
Target Start/End: Complemental strand, 10214903 - 10214745
Alignment:
Q  123 ttatatatatttttacttttggtaagtgattcaaatatgcaatttctagttaaagtcctctcatatactaaaa-taaatgtatcatgttgtcatttttct 221  Q
    ||||||| |||||||| || || |||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||    
T  10214903 ttatatacatttttaccttaggaaagtgagtcaaatatgcaatttctagttaaagtcctctcatatactaaaaataaatgtatcatattgtcatttttct 10214804  T
Q  222 tatcatctgtgttcaaaattaaaaacaatgtactagagattatgtcgataacttttcta 280  Q
    ||||| ||||||| ||| ||||||| ||| |||||||||||| || |||||| ||||||    
T  10214803 tatcacctgtgttaaaatttaaaaataatttactagagattacgttgataacctttcta 10214745  T

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Target: chr3; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 123 - 280
Target Start/End: Complemental strand, 10223644 - 10223486
Alignment:
Q  123 ttatatatatttttacttttggtaagtgattcaaatatgcaatttctagttaaagtcctctcatatactaaaa-taaatgtatcatgttgtcatttttct 221  Q
    ||||||| |||||||| || || |||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||    
T  10223644 ttatatacatttttaccttaggaaagtgagtcaaatatgcaatttctagttaaagtcctctcatatactaaaaataaatgtatcatattgtcatttttct 10223545  T
Q  222 tatcatctgtgttcaaaattaaaaacaatgtactagagattatgtcgataacttttcta 280  Q
    ||||| ||||||| ||| ||||||| ||| |||||||||||| || |||||| ||||||    
T  10223544 tatcacctgtgttaaaatttaaaaataatttactagagattacgttgataacctttcta 10223486  T

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Target: chr3; HSP #3
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 124 - 280
Target Start/End: Complemental strand, 10103966 - 10103809
Alignment:
Q  124 tatatatatttttacttttggtaagtgattcaaatatgcaatttctagttaaagtcctctcatatactaaaa-taaatgtatcatgttgtcatttttctt 222  Q
    |||||| ||||||||||| || |||||| |||||||||||||||||||||||| |||||||||||||||||| |||||||||||| ||||||||||||||    
T  10103966 tatatacatttttactttaggaaagtgagtcaaatatgcaatttctagttaaattcctctcatatactaaaaataaatgtatcatattgtcatttttctt 10103867  T
Q  223 atcatctgtgttcaaaattaaaaacaatgtactagagattatgtcgataacttttcta 280  Q
    |||| ||||||| ||| ||||||| ||| |||||||||||| || |||||| ||||||    
T  10103866 atcacctgtgttaaaatttaaaaataatttactagagattacgttgataacctttcta 10103809  T

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Target: chr3; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 134 - 246
Target Start/End: Complemental strand, 10123755 - 10123644
Alignment:
Q  134 tttacttttggtaagtgattcaaatatgcaatttctagttaaagtcctctcatatact-aaaataaatgtatcatgttgtcatttttcttatcatctgtg 232  Q
    |||||||| || |||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| |||  ||||||||||||||||| |||||    
T  10123755 tttactttaggaaagtgattcaaatatgcaatttctcgttaaagtcctctcatatactaaaaataaatgtagcat-atgtcatttttcttatcacctgtg 10123657  T
Q  233 ttcaaaattaaaaa 246  Q
    || |||||||||||    
T  10123656 tt-aaaattaaaaa 10123644  T

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Target: chr3; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 134 - 246
Target Start/End: Complemental strand, 10180409 - 10180298
Alignment:
Q  134 tttacttttggtaagtgattcaaatatgcaatttctagttaaagtcctctcatatact-aaaataaatgtatcatgttgtcatttttcttatcatctgtg 232  Q
    |||||||| || |||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| |||  ||||||||||||||||| |||||    
T  10180409 tttactttaggaaagtgattcaaatatgcaatttctcgttaaagtcctctcatatactaaaaataaatgtagcat-atgtcatttttcttatcacctgtg 10180311  T
Q  233 ttcaaaattaaaaa 246  Q
    || |||||||||||    
T  10180310 tt-aaaattaaaaa 10180298  T

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Target: chr3; HSP #6
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 134 - 246
Target Start/End: Complemental strand, 10256524 - 10256413
Alignment:
Q  134 tttacttttggtaagtgattcaaatatgcaatttctagttaaagtcctctcatatact-aaaataaatgtatcatgttgtcatttttcttatcatctgtg 232  Q
    |||||||| || |||||||||||||||||||||||| ||||||||||||||||||||| |||||||| ||| |||  ||||||||||||||||| |||||    
T  10256524 tttactttaggaaagtgattcaaatatgcaatttctcgttaaagtcctctcatatactaaaaataaacgtagcat-atgtcatttttcttatcacctgtg 10256426  T
Q  233 ttcaaaattaaaaa 246  Q
    || |||||||||||    
T  10256425 tt-aaaattaaaaa 10256413  T

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Target: chr3; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 11768494 - 11768325
Alignment:
Q  1 aaagctggaaagcaaggctcagcagtggttaatattggaccgacatcttacaaaataattgatacaatgaaaaaggaaaaattgca---gtcactaaaac 97  Q
    ||||| ||||||||| | ||| || |||||||||||||||| |||||  |||||||||||||||||| |||||||||||| |||||    | | ||||      
T  11768494 aaagcgggaaagcaaagttcaccattggttaatattggacctacatcccacaaaataattgatacaaagaaaaaggaaaagttgcacacttaattaaagg 11768395  T
Q  98 catcggaatc-ttaaatagcatata-attatatatatttttacttttggtaagtgattcaaatatgcaat 165  Q
    ||||| |||| |||||||||| |||  ||||||| |||||||||||||| ||||||||||||||||||||    
T  11768394 catcgaaatctttaaatagcagatactttatatacatttttacttttggaaagtgattcaaatatgcaat 11768325  T

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Target: chr3; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 10076370 - 10076299
Alignment:
Q  1 aaagctggaaagcaaggctcagcagtggttaatattggaccgacatcttacaaaataattgatacaatgaaa 72  Q
    |||||||||||| || |||||| |||||||||||||||||| |||||  |||||||||||||||||| ||||    
T  10076370 aaagctggaaagtaaagctcagtagtggttaatattggacccacatcccacaaaataattgatacaaggaaa 10076299  T

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Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 134 - 186
Target Start/End: Complemental strand, 10028854 - 10028802
Alignment:
Q  134 tttacttttggtaagtgattcaaatatgcaatttctagttaaagtcctctcat 186  Q
    |||||||| || |||||||||||||||||||||||| ||||||||||||||||    
T  10028854 tttactttaggaaagtgattcaaatatgcaatttctcgttaaagtcctctcat 10028802  T

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Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 10031204 - 10031125
Alignment:
Q  1 aaagctggaaagcaaggctcagcagtggttaatattggaccgacatcttacaaaataattgatacaatgaaaaaggaaaa 80  Q
    ||||||||||||||| ||||| || || ||||||||||||| |||||   ||||||||||||||||| ||||||| ||||    
T  10031204 aaagctggaaagcaaagctcatcattgtttaatattggacccacatccctcaaaataattgatacaaagaaaaagaaaaa 10031125  T

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Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 9838114 - 9838029
Alignment:
Q  1 aaagctggaaagcaaggctcagcagtggttaatattggaccgacatcttacaaaataattgatacaatgaaaaaggaaaaattgca 86  Q
    ||||||||||||||| ||| | || || ||||||||||||| |||||   ||||||||||||||||| ||||||| |||| |||||    
T  9838114 aaagctggaaagcaaagcttaacattgtttaatattggacccacatccctcaaaataattgatacaaagaaaaagaaaaagttgca 9838029  T

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Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 9848992 - 9848907
Alignment:
Q  1 aaagctggaaagcaaggctcagcagtggttaatattggaccgacatcttacaaaataattgatacaatgaaaaaggaaaaattgca 86  Q
    ||||||||||||||| ||| | || || ||||||||||||| |||||   ||||||||||||||||| ||||||| |||| |||||    
T  9848992 aaagctggaaagcaaagcttaacattgtttaatattggacccacatccctcaaaataattgatacaaagaaaaagaaaaagttgca 9848907  T

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Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 9837907 - 9837824
Alignment:
Q  1 aaagctggaaagcaaggctcagcagtggttaatattggaccgacatcttacaaaataattgatacaatgaaaaaggaaaaattgca 86  Q
    ||||||||||||||| |||   || || ||||||||||||| |||||  |||||||||||||| ||| |||||||||||| |||||    
T  9837907 aaagctggaaagcaaagctt--cattgtttaatattggacccacatcccacaaaataattgatgcaaagaaaaaggaaaagttgca 9837824  T

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Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 9848785 - 9848702
Alignment:
Q  1 aaagctggaaagcaaggctcagcagtggttaatattggaccgacatcttacaaaataattgatacaatgaaaaaggaaaaattgca 86  Q
    ||||||||||||||| |||   || || ||||||||||||| |||||  |||||||||||||| ||| |||||||||||| |||||    
T  9848785 aaagctggaaagcaaagctt--cattgtttaatattggacccacatcccacaaaataattgatgcaaagaaaaaggaaaagttgca 9848702  T

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Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 10126145 - 10126060
Alignment:
Q  1 aaagctggaaagcaaggctcagcagtggttaatattggaccgacatcttacaaaataattgatacaatgaaaaaggaaaaattgca 86  Q
    ||||||||||||||| | ||| || || ||||||||||||| |||||   ||||||||||||||||| | ||||| |||| |||||    
T  10126145 aaagctggaaagcaaaggtcatcattgtttaatattggacccacatccctcaaaataattgatacaaagcaaaagaaaaagttgca 10126060  T

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Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 10658006 - 10657930
Alignment:
Q  1 aaagctggaaagcaaggctcagcagtggttaatattggaccgacatcttacaaaataattgatacaatgaaaaaggaaaa 80  Q
    ||||||||||||||| | ||| ||||| |||||   ||||| ||||| | ||||||||||||||||| ||||||||||||    
T  10658006 aaagctggaaagcaaaggtcatcagtgattaat---ggacccacatccttcaaaataattgatacaaagaaaaaggaaaa 10657930  T

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Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 10662721 - 10662639
Alignment:
Q  1 aaagctggaaagcaaggctcagcagtggttaatattggaccgacatcttacaaaataattgatacaatgaaaaaggaaaaattgca 86  Q
    ||||||||||||||| | ||| ||||| |||||   ||||| ||||| | |||||||||| |||||| |||||||||||| |||||    
T  10662721 aaagctggaaagcaaagttcatcagtgattaat---ggacccacatccttcaaaataattaatacaaagaaaaaggaaaagttgca 10662639  T

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Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 10104100 - 10104042
Alignment:
Q  1 aaagctggaaagcaaggctcagcagtggttaatattggaccgacatcttacaaaataattga 62  Q
    ||||||||||||||| |||||||||| |||||||||||||  |||||  |||||||||||||    
T  10104100 aaagctggaaagcaaagctcagcagt-gttaatattggac--acatcccacaaaataattga 10104042  T

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Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 80
Target Start/End: Complemental strand, 10516674 - 10516630
Alignment:
Q  36 tggaccgacatcttacaaaataattgatacaatgaaaaaggaaaa 80  Q
    |||||| ||||| | ||||||||||||||||| ||||||||||||    
T  10516674 tggacccacatccttcaaaataattgatacaaagaaaaaggaaaa 10516630  T

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