View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10954A_low_247 (Length: 284)
Name: NF10954A_low_247
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_247 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 2 - 269
Target Start/End: Complemental strand, 33339434 - 33339167
Alignment:
| Q |
2 |
cataatttgggctcacaacaaaaatggcagctgcactactaaaagccgttatgcatggcttctttccctcaaagctacagtggctgatcctagttctcaa |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
33339434 |
cataatttgggctcacaacaaaaatggcagctacactactaaaagcggctatgcatggcttctttccctcaaagctacagtggcagatcctagttctcat |
33339335 |
T |
|
| Q |
102 |
cattcatggacttggatctggagattgcaagttccggaaaaatataaatttctcatttggttagctagccacaatgcctcccctactttatctttgcttc |
201 |
Q |
| |
|
|||||||||| |||||| ||||||||| |||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
33339334 |
cattcatggatttggatttggagattgtaagttctggaaaaatataaatttctcatttggttagcttgccacaatgcctcccctactttatctttgcttc |
33339235 |
T |
|
| Q |
202 |
atcataggaatatggcaccttcggccacctgtgcacgttgcggagatcatgatgaaaccttccttcat |
269 |
Q |
| |
|
||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33339234 |
atcatagtaatatggcaccttcggctacctgtgcacgttgcggagatcatgatgaaaccttccttcat |
33339167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 112 - 268
Target Start/End: Complemental strand, 10116216 - 10116060
Alignment:
| Q |
112 |
cttggatctggagattgcaagttccggaaaaatataaatttctcatttggttagctagccacaatgcctcccctactttatctttgcttcatcataggaa |
211 |
Q |
| |
|
||||||| ||||| ||||| |||| ||||||||||||||||||| | ||||| || | |||||||| || ||||| ||||||||||||||||||||||| |
|
|
| T |
10116216 |
cttggatatggaggttgcaggttctggaaaaatataaatttctcgtatggtttacttgtcacaatgcttctcctaccttatctttgcttcatcataggaa |
10116117 |
T |
|
| Q |
212 |
tatggcaccttcggccacctgtgcacgttgcggagatcatgatgaaaccttccttca |
268 |
Q |
| |
|
|| || | ||| |||||| | | || || ||||||||||||||| |||||||| |
|
|
| T |
10116116 |
catagctctctcgcccacctatactcgatgttaagatcatgatgaaactttccttca |
10116060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 214
Target Start/End: Original strand, 35234803 - 35234887
Alignment:
| Q |
130 |
aagttccggaaaaatataaatttctcatttggttagctagccacaatgcctcccctactttatctttgcttcatcataggaatat |
214 |
Q |
| |
|
|||| ||||||||||| || |||||||||||| ||||| | |||||||| ||| || ||||||||||| |||| |||||||| |
|
|
| T |
35234803 |
aagtgccggaaaaatacaagtttctcatttggctagcttgtcacaatgctgtccccaccttatctttgctaaatcacaggaatat |
35234887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University