View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10954A_low_249 (Length: 283)
Name: NF10954A_low_249
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_249 |
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Alignment Details
Target: chr1 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 3 - 268
Target Start/End: Complemental strand, 4750780 - 4750515
Alignment:
| Q |
3 |
atgagaggtttggtttctttctctttgtttggatgtttaaaatccaccagagttgggggtggaagggaggccgctttgagatgtttataaaaatggataa |
102 |
Q |
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| T |
4750780 |
atgagaggtttggtttctttctctttgtttggatgtttaaaatccaccaaagttgggggcggaagggaggccgctttgagatgtttataaaaatgggtaa |
4750681 |
T |
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| Q |
103 |
gggtaggggtaggatgtagaatcacatgttaatgcctcgtttgataaaactgccaaacaagttgcgtgtttatgtaaagcatctttccctttgttctcct |
202 |
Q |
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| T |
4750680 |
gggtaggggtaggatgtagaatcacatgttaatgcctcatttgataaaactgccaaacaagttgcatgtttatgtaaagcatctttccctttgttctcct |
4750581 |
T |
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| Q |
203 |
tcatccaacacaatgacttattggtagttttcttccctttgatcaattgttctctgtcattaacat |
268 |
Q |
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| T |
4750580 |
tcatccaacacaatgacttattggtagttttcttccctttgatcaattgttctctgtcattaacat |
4750515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 3 - 195
Target Start/End: Complemental strand, 4750986 - 4750794
Alignment:
| Q |
3 |
atgagaggtttggtttctttctctttgtttggatgtttaaaatccaccagagttgggggtggaagggaggccgctttgagatgtttataaaaatggataa |
102 |
Q |
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| T |
4750986 |
atgagaggtttggtttctttctctttgtttggatgtttaaaatccaccagagttgggggcggaagggaggccgctttgagatgtttataaaaatgggtaa |
4750887 |
T |
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| Q |
103 |
gggtaggggtaggatgtagaatcacatgttaatgcctcgtttgataaaactgccaaacaagttgcgtgtttatgtaaagcatctttccctttg |
195 |
Q |
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| T |
4750886 |
gggtaggggtaggatgtagaatcacatgttaatgcctcatttgataaaactgccaaacaagttgcatgtttatgtaaagcatctttcgctttg |
4750794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 153; Significance: 4e-81; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 3 - 171
Target Start/End: Original strand, 51322743 - 51322911
Alignment:
| Q |
3 |
atgagaggtttggtttctttctctttgtttggatgtttaaaatccaccagagttgggggtggaagggaggccgctttgagatgtttataaaaatggataa |
102 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
51322743 |
atgagaggtttggtttctttctctttgtttggatgtttaaaatccaccagagttgggggcggaagggaggccgctttgagatgtttataaaaatggataa |
51322842 |
T |
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| Q |
103 |
gggtaggggtaggatgtagaatcacatgttaatgcctcgtttgataaaactgccaaacaagttgcgtgt |
171 |
Q |
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| T |
51322843 |
gggtaggggtaggatgtagaatcacatcttaatgccacatttgataaaactgccaaacaagttgcgtgt |
51322911 |
T |
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