View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10954A_low_250 (Length: 283)

Name: NF10954A_low_250
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10954A_low_250
NF10954A_low_250
[»] chr1 (8 HSPs)
chr1 (28-283)||(35162933-35163190)
chr1 (28-282)||(30403109-30403365)
chr1 (28-282)||(30409666-30409922)
chr1 (53-282)||(29394291-29394520)
chr1 (28-159)||(29393903-29394036)
chr1 (49-159)||(30402771-30402881)
chr1 (49-159)||(30409328-30409438)
chr1 (49-159)||(35163418-35163528)
[»] chr8 (6 HSPs)
chr8 (28-282)||(11143689-11143945)
chr8 (28-282)||(1604071-1604327)
chr8 (49-159)||(11144173-11144283)
chr8 (49-159)||(1661482-1661592)
chr8 (213-282)||(1661604-1661673)
chr8 (28-126)||(44551873-44551972)
[»] chr3 (2 HSPs)
chr3 (28-282)||(55040338-55040594)
chr3 (49-159)||(55040000-55040110)
[»] chr5 (2 HSPs)
chr5 (28-282)||(9260837-9261093)
chr5 (49-159)||(9260497-9260607)
[»] chr7 (3 HSPs)
chr7 (100-282)||(13947644-13947826)
chr7 (49-159)||(13948053-13948163)
chr7 (52-140)||(1972595-1972683)
[»] chr4 (2 HSPs)
chr4 (167-283)||(46623684-46623800)
chr4 (52-140)||(36892665-36892753)
[»] chr6 (3 HSPs)
chr6 (173-282)||(2311861-2311970)
chr6 (28-119)||(32445856-32445949)
chr6 (28-126)||(14986903-14987002)
[»] chr2 (1 HSPs)
chr2 (52-140)||(26450122-26450210)


Alignment Details
Target: chr1 (Bit Score: 206; Significance: 1e-113; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 28 - 283
Target Start/End: Complemental strand, 35163190 - 35162933
Alignment:
Q  28 gcagccaacaaagaggcactgca--gcctgctgcccttcgagaacagaccacaaaaaacagaaaccacctcgacaaagtataccaaaactatcactattt 125  Q
    |||||||||||||| ||||| ||  ||||||||||| || |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35163190 gcagccaacaaagatgcactacacagcctgctgcccctcaagaacacaccacaaaaaacagaaaccacctcgacaaagtataccaaaactatcactattt 35163091  T
Q  126 tctcaaaagacaatctttatcactttatgtaaagnnnnnnnatttgcacactattttatcataacattgacaatacttgttgtgcaaatttacatctaat 225  Q
    ||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35163090 tctcaaaagacaatctttatcactttatgtaaagtttttttatttgcacactattttatcataacattgacaatacttgttgtgcaaatttacatctaat 35162991  T
Q  226 ggaactatatttcatattagttattcacacccattatcgtgatgatagtggctcatga 283  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35162990 ggaactatatttcatattagttattcacacccattatcgtgatgatagtggctcatga 35162933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 28 - 282
Target Start/End: Original strand, 30403109 - 30403365
Alignment:
Q  28 gcagccaacaaagaggcactgca--gcctgctgcccttcgagaacagaccacaaaaaacagaaaccacctcgacaaagtataccaaaactatcactattt 125  Q
    |||||||||||||| ||||| ||  ||||||||||| || |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30403109 gcagccaacaaagatgcactacacagcctgctgcccctcaagaacacaccacaaaaaacagaaaccacctcgacaaagtataccaaaactatcactattt 30403208  T
Q  126 tctcaaaagacaatctttatcactttatgtaaagnnnnnnnatttgcacactattttatcataacattgacaatacttgttgtgcaaatttacatctaat 225  Q
    |||||||||||||||||||||| |||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30403209 tctcaaaagacaatctttatcaatttatgtaaagtttatttatttgcacactattttatcataacattgacaatacttgttgtgcaaatttacatctaat 30403308  T
Q  226 ggaactatatttcatattagttattcacacccattatcgtgatgatagtggctcatg 282  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30403309 ggaactatatttcatattagttattcacacccattatcgtgatgatagtggctcatg 30403365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 28 - 282
Target Start/End: Original strand, 30409666 - 30409922
Alignment:
Q  28 gcagccaacaaagaggcactgca--gcctgctgcccttcgagaacagaccacaaaaaacagaaaccacctcgacaaagtataccaaaactatcactattt 125  Q
    |||||||||||||| ||||| ||  ||||||||||| || |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30409666 gcagccaacaaagatgcactacacagcctgctgcccctcaagaacacaccacaaaaaacagaaaccacctcgacaaagtataccaaaactatcactattt 30409765  T
Q  126 tctcaaaagacaatctttatcactttatgtaaagnnnnnnnatttgcacactattttatcataacattgacaatacttgttgtgcaaatttacatctaat 225  Q
    |||||||||||||||||||||| |||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30409766 tctcaaaagacaatctttatcaatttatgtaaagtttatttatttgcacactattttatcataacattgacaatacttgttgtgcaaatttacatctaat 30409865  T
Q  226 ggaactatatttcatattagttattcacacccattatcgtgatgatagtggctcatg 282  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30409866 ggaactatatttcatattagttattcacacccattatcgtgatgatagtggctcatg 30409922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 53 - 282
Target Start/End: Original strand, 29394291 - 29394520
Alignment:
Q  53 ctgctgcccttcgagaacagaccacaaaaaacagaaaccacctcgacaaagtataccaaaactatcactattttctcaaaagacaatctttatcacttta 152  Q
    ||||||||| || |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  29394291 ctgctgcccctcaagaacacaccacgaaaaacagaaaccacctcgacaaagtataccaaaactatcactattttctcaaaagacaatctttatcaattta 29394390  T
Q  153 tgtaaagnnnnnnnatttgcacactattttatcataacattgacaatacttgttgtgcaaatttacatctaatggaactatatttcatattagttattca 252  Q
    |||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29394391 tgtaaagtttatttatttgcacactattttatcataacattgacaatacttgttgtgcaaatttacatctaatggaactatatttcatattagttattca 29394490  T
Q  253 cacccattatcgtgatgatagtggctcatg 282  Q
    ||||||||||||||||||||||||||||||    
T  29394491 cacccattatcgtgatgatagtggctcatg 29394520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 28 - 159
Target Start/End: Original strand, 29393903 - 29394036
Alignment:
Q  28 gcagccaacaaagaggcactgcag--cctgctgcccttcgagaacagaccacaaaaaacagaaaccacctcgacaaagtataccaaaactatcactattt 125  Q
    |||||||||| ||||||||| ||   |||||||  | |||||| || | ||||||||||| ||||||||||||||||||  |||||||||||||||||||    
T  29393903 gcagccaacacagaggcactacacatcctgctgttcctcgagagcacatcacaaaaaacataaaccacctcgacaaagtccaccaaaactatcactattt 29394002  T
Q  126 tctcaaaagacaatctttatcactttatgtaaag 159  Q
    ||||||| |||||||||||||| |||||||||||    
T  29394003 tctcaaaggacaatctttatcaatttatgtaaag 29394036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 49 - 159
Target Start/End: Original strand, 30402771 - 30402881
Alignment:
Q  49 cagcctgctgcccttcgagaacagaccacaaaaaacagaaaccacctcgacaaagtataccaaaactatcactattttctcaaaagacaatctttatcac 148  Q
    |||||||||| ||||||||| || ||||||||||||| |||||||||||||| |||  |||||||||||||||||||||||||| |||| ||||| |||     
T  30402771 cagcctgctgtccttcgagagcacaccacaaaaaacataaaccacctcgacagagtccaccaaaactatcactattttctcaaaggacagtctttttcaa 30402870  T
Q  149 tttatgtaaag 159  Q
    |||||||||||    
T  30402871 tttatgtaaag 30402881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 49 - 159
Target Start/End: Original strand, 30409328 - 30409438
Alignment:
Q  49 cagcctgctgcccttcgagaacagaccacaaaaaacagaaaccacctcgacaaagtataccaaaactatcactattttctcaaaagacaatctttatcac 148  Q
    |||||||||| ||||||||| || ||||||||||||| |||||||||||||| |||  |||||||||||||||||||||||||| |||| ||||| |||     
T  30409328 cagcctgctgtccttcgagagcacaccacaaaaaacataaaccacctcgacagagtccaccaaaactatcactattttctcaaaggacagtctttttcaa 30409427  T
Q  149 tttatgtaaag 159  Q
    |||||||||||    
T  30409428 tttatgtaaag 30409438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 49 - 159
Target Start/End: Complemental strand, 35163528 - 35163418
Alignment:
Q  49 cagcctgctgcccttcgagaacagaccacaaaaaacagaaaccacctcgacaaagtataccaaaactatcactattttctcaaaagacaatctttatcac 148  Q
    ||||||| || || |||||| || ||||||||||||| ||||||| ||||||||||  |||||||||||||||||||||||||| ||||||||||||||     
T  35163528 cagcctgttgtccctcgagagcacaccacaaaaaacataaaccacttcgacaaagtccaccaaaactatcactattttctcaaaggacaatctttatcaa 35163429  T
Q  149 tttatgtaaag 159  Q
    |||||||||||    
T  35163428 tttatgtaaag 35163418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 201; Significance: 1e-110; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 28 - 282
Target Start/End: Complemental strand, 11143945 - 11143689
Alignment:
Q  28 gcagccaacaaagaggcactgca--gcctgctgcccttcgagaacagaccacaaaaaacagaaaccacctcgacaaagtataccaaaactatcactattt 125  Q
    |||||||||||||| ||||| ||  ||||||||||| || |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11143945 gcagccaacaaagatgcactacacagcctgctgcccctcaagaacacaccacaaaaaacagaaaccacctcgacaaagtataccaaaactatcactattt 11143846  T
Q  126 tctcaaaagacaatctttatcactttatgtaaagnnnnnnnatttgcacactattttatcataacattgacaatacttgttgtgcaaatttacatctaat 225  Q
    |||||||||||||||||||||| |||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11143845 tctcaaaagacaatctttatcaatttatgtaaagtttatttatttgcacactattttatcataacattgacaatacttgttgtgcaaatttacatctaat 11143746  T
Q  226 ggaactatatttcatattagttattcacacccattatcgtgatgatagtggctcatg 282  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11143745 ggaactatatttcatattagttattcacacccattatcgtgatgatagtggctcatg 11143689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 28 - 282
Target Start/End: Original strand, 1604071 - 1604327
Alignment:
Q  28 gcagccaacaaagaggcactgcag--cctgctgcccttcgagaacagaccacaaaaaacagaaaccacctcgacaaagtataccaaaactatcactattt 125  Q
    |||||||||||||||||||| ||   |||||||||| ||||||||| ||||||||||||||||||||| ||||||||||  |||||||||||||||||||    
T  1604071 gcagccaacaaagaggcactacacatcctgctgcccctcgagaacacaccacaaaaaacagaaaccacatcgacaaagtccaccaaaactatcactattt 1604170  T
Q  126 tctcaaaagacaatctttatcactttatgtaaagnnnnnnnatttgcacactattttatcataacattgacaatacttgttgtgcaaatttacatctaat 225  Q
    |||||||||||||||||||||| |||||||||||       ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  1604171 tctcaaaagacaatctttatcaatttatgtaaagtttatttatttgcacactattttatcataacattgacaatacttgttgtgaaaatttacatctaat 1604270  T
Q  226 ggaactatatttcatattagttattcacacccattatcgtgatgatagtggctcatg 282  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1604271 ggaactatatttcatattagttattcacacccattatcgtgatgatagtggctcatg 1604327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 49 - 159
Target Start/End: Complemental strand, 11144283 - 11144173
Alignment:
Q  49 cagcctgctgcccttcgagaacagaccacaaaaaacagaaaccacctcgacaaagtataccaaaactatcactattttctcaaaagacaatctttatcac 148  Q
    |||||||||| ||||||||| || ||||||||||||| ||||||||||||||||||  |||||||||||||||||||||||||| |||| |||||||||     
T  11144283 cagcctgctgtccttcgagagcacaccacaaaaaacataaaccacctcgacaaagtccaccaaaactatcactattttctcaaaggacagtctttatcaa 11144184  T
Q  149 tttatgtaaag 159  Q
    |||||||||||    
T  11144183 tttatgtaaag 11144173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 49 - 159
Target Start/End: Original strand, 1661482 - 1661592
Alignment:
Q  49 cagcctgctgcccttcgagaacagaccacaaaaaacagaaaccacctcgacaaagtataccaaaactatcactattttctcaaaagacaatctttatcac 148  Q
    |||||||||| || |||||| || |||| |||||||| ||||||||||||| ||||  |||||||||||||||||||||||||| ||||||||||||||     
T  1661482 cagcctgctgtccctcgagagcacaccataaaaaacataaaccacctcgacgaagtccaccaaaactatcactattttctcaaaggacaatctttatcaa 1661581  T
Q  149 tttatgtaaag 159  Q
    |||||||||||    
T  1661582 tttatgtaaag 1661592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 213 - 282
Target Start/End: Original strand, 1661604 - 1661673
Alignment:
Q  213 atttacatctaatggaactatatttcatattagttattcacacccattatcgtgatgatagtggctcatg 282  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1661604 atttacatctaatgaaactatatttcatattagttattcacacccattatcgtgatgatagtggctcatg 1661673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 28 - 126
Target Start/End: Complemental strand, 44551972 - 44551873
Alignment:
Q  28 gcagccaacaaagaggcactgca--gcctgctgcccttcgagaacagaccacaaaaaacagaaaccacctcgacaaagtataccaaaactatcactattt 125  Q
    |||||||||| ||||||||| ||  ||||||||||| ||||||  | |||||||||||||||||| |||||||||||||  |||||||||||||||||||    
T  44551972 gcagccaacacagaggcactacacagcctgctgcccctcgagagaacaccacaaaaaacagaaac-acctcgacaaagtccaccaaaactatcactattt 44551874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 28 - 282
Target Start/End: Original strand, 55040338 - 55040594
Alignment:
Q  28 gcagccaacaaagaggcactgca--gcctgctgcccttcgagaacagaccacaaaaaacagaaaccacctcgacaaagtataccaaaactatcactattt 125  Q
    |||||||||||||| ||||| ||  ||||||||||| || |||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  55040338 gcagccaacaaagatgcactacacagcctgctgcccctcaagaacacaccacaaaaaacagaaaccacctcgacaaagtataccaaaaatatcactattt 55040437  T
Q  126 tctcaaaagacaatctttatcactttatgtaaagnnnnnnnatttgcacactattttatcataacattgacaatacttgttgtgcaaatttacatctaat 225  Q
    ||||||||||||||||| |||| |||||||||||       |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  55040438 tctcaaaagacaatcttcatcaatttatgtaaagtttatttatttgcacactattttatcataacattgacaatacttgttatgcaaatttacatctaat 55040537  T
Q  226 ggaactatatttcatattagttattcacacccattatcgtgatgatagtggctcatg 282  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55040538 gaaactatatttcatattagttattcacacccattatcgtgatgatagtggctcatg 55040594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 49 - 159
Target Start/End: Original strand, 55040000 - 55040110
Alignment:
Q  49 cagcctgctgcccttcgagaacagaccacaaaaaacagaaaccacctcgacaaagtataccaaaactatcactattttctcaaaagacaatctttatcac 148  Q
    |||||||||| || |||||| || ||||||||||||| ||||||||||||||||||  |||||||||||||||||||||||||| || |||||||||||     
T  55040000 cagcctgctgtccctcgagagcacaccacaaaaaacataaaccacctcgacaaagtccaccaaaactatcactattttctcaaaggataatctttatcaa 55040099  T
Q  149 tttatgtaaag 159  Q
    |||||||||||    
T  55040100 tttatgtaaag 55040110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 157; Significance: 2e-83; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 28 - 282
Target Start/End: Original strand, 9260837 - 9261093
Alignment:
Q  28 gcagccaacaaagaggcactgca--gcctgctgcccttcgagaacagaccacaaaaaacagaaaccacctcgacaaagtataccaaaactatcactattt 125  Q
    |||||||||| ||||||||| ||  ||||||||||| |||||| || |||||||||||||||||||||||||||||| |  |||||||||||||||||||    
T  9260837 gcagccaacacagaggcactacacagcctgctgcccctcgagagcacaccacaaaaaacagaaaccacctcgacaaaatccaccaaaactatcactattt 9260936  T
Q  126 tctcaaaagacaatctttatcactttatgtaaagnnnnnnnatttgcacactattttatcataacattgacaatacttgttgtgcaaatttacatctaat 225  Q
    |||||| ||||||||| ||||| |||||||||||       |||||||||||||||||||||||||| |||||||| | ||||||||||||| |||||||    
T  9260937 tctcaacagacaatctctatcaatttatgtaaagtttatttatttgcacactattttatcataacatagacaatacctattgtgcaaatttagatctaat 9261036  T
Q  226 ggaactatatttcatattagttattcacacccattatcgtgatgatagtggctcatg 282  Q
    |||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||    
T  9261037 ggaactatatttcatattagttattcactcccattatcgtgatgattgtggctcatg 9261093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 49 - 159
Target Start/End: Original strand, 9260497 - 9260607
Alignment:
Q  49 cagcctgctgcccttcgagaacagaccacaaaaaacagaaaccacctcgacaaagtataccaaaactatcactattttctcaaaagacaatctttatcac 148  Q
    |||||||||| || |||||| || || |||||||||| ||||||||||||||||||  |||||||||||| ||||||||||||||||||||||||||||     
T  9260497 cagcctgctgtccctcgagagcacactacaaaaaacaaaaaccacctcgacaaagtccaccaaaactatcgctattttctcaaaagacaatctttatcaa 9260596  T
Q  149 tttatgtaaag 159  Q
    ||||| |||||    
T  9260597 tttatataaag 9260607  T

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Target: chr7 (Bit Score: 154; Significance: 1e-81; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 100 - 282
Target Start/End: Complemental strand, 13947826 - 13947644
Alignment:
Q  100 aaagtataccaaaactatcactattttctcaaaagacaatctttatcactttatgtaaagnnnnnnnatttgcacactattttatcataacattgacaat 199  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||       |||||||||||||||||||||||||||||||||    
T  13947826 aaagtataccaaaactatcattattttctcaaaagacaatctttatcaatttatgtaaagtttatttatttgcacactattttatcataacattgacaat 13947727  T
Q  200 acttgttgtgcaaatttacatctaatggaactatatttcatattagttattcacacccattatcgtgatgatagtggctcatg 282  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13947726 acttgttgtgcaaatttacatctaatggaactatatttcatattagttattcacacccattatcgtgatgatagtggctcatg 13947644  T

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Target: chr7; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 49 - 159
Target Start/End: Complemental strand, 13948163 - 13948053
Alignment:
Q  49 cagcctgctgcccttcgagaacagaccacaaaaaacagaaaccacctcgacaaagtataccaaaactatcactattttctcaaaagacaatctttatcac 148  Q
    |||||||||| || ||||||||| ||||||||||||| ||||||||||||||||||   ||||||||||||||||||||||||| ||||||||||||||     
T  13948163 cagcctgctgtccctcgagaacacaccacaaaaaacataaaccacctcgacaaagtcccccaaaactatcactattttctcaaaggacaatctttatcaa 13948064  T
Q  149 tttatgtaaag 159  Q
    |||||||||||    
T  13948063 tttatgtaaag 13948053  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 52 - 140
Target Start/End: Complemental strand, 1972683 - 1972595
Alignment:
Q  52 cctgctgcccttcgagaacagaccacaaaaaacagaaaccacctcgacaaagtataccaaaactatcactattttctcaaaagacaatc 140  Q
    |||||||||| |||||  || ||| ||||  ||||||||||| |||| |||||  |||||||||| |||||||||||||| ||||||||    
T  1972683 cctgctgcccctcgagggcacaccgcaaaggacagaaaccacttcgaaaaagtccaccaaaactaccactattttctcaacagacaatc 1972595  T

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Target: chr4 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 167 - 283
Target Start/End: Original strand, 46623684 - 46623800
Alignment:
Q  167 atttgcacactattttatcataacattgacaatacttgttgtgcaaatttacatctaatggaactatatttcatattagttattcacacccattatcgtg 266  Q
    |||| ||||||||||||||||||||  ||||||||||||||||||||||||  |||||||||||||||||||||| |||||| ||||||||||||| |||    
T  46623684 atttacacactattttatcataacaaagacaatacttgttgtgcaaatttaggtctaatggaactatatttcataatagttaatcacacccattatggtg 46623783  T
Q  267 atgatagtggctcatga 283  Q
    |||||||||||||||||    
T  46623784 atgatagtggctcatga 46623800  T

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Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 52 - 140
Target Start/End: Complemental strand, 36892753 - 36892665
Alignment:
Q  52 cctgctgcccttcgagaacagaccacaaaaaacagaaaccacctcgacaaagtataccaaaactatcactattttctcaaaagacaatc 140  Q
    |||||||||| |||||  || ||| ||||| ||||||||||| ||||||||||  ||||||||||||||||||||||||| ||||||||    
T  36892753 cctgctgcccctcgagggcacaccgcaaaagacagaaaccacttcgacaaagtccaccaaaactatcactattttctcaacagacaatc 36892665  T

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Target: chr6 (Bit Score: 78; Significance: 2e-36; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 173 - 282
Target Start/End: Original strand, 2311861 - 2311970
Alignment:
Q  173 acactattttatcataacattgacaatacttgttgtgcaaatttacatctaatggaactatatttcatattagttattcacacccattatcgtgatgata 272  Q
    |||||||||||||||||||| |||||||| | ||||||||||||| ||||||||||||||||||| ||||||| ||||||| |||||||||||||||||     
T  2311861 acactattttatcataacatagacaatacctattgtgcaaatttagatctaatggaactatatttgatattaggtattcactcccattatcgtgatgatt 2311960  T
Q  273 gtggctcatg 282  Q
    ||||||||||    
T  2311961 gtggctcatg 2311970  T

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Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 28 - 119
Target Start/End: Complemental strand, 32445949 - 32445856
Alignment:
Q  28 gcagccaacaaagaggcactgca--gcctgctgcccttcgagaacagaccacaaaaaacagaaaccacctcgacaaagtataccaaaactatca 119  Q
    ||||| |||||||||||||| ||  ||||||||||| |||||| || ||||||||||||||||||||||||||||||||  |||||||||||||    
T  32445949 gcagctaacaaagaggcactacacagcctgctgcccctcgagagcacaccacaaaaaacagaaaccacctcgacaaagtccaccaaaactatca 32445856  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 28 - 126
Target Start/End: Original strand, 14986903 - 14987002
Alignment:
Q  28 gcagccaacaaagaggcactgca--gcctgctgcccttcgagaacagaccacaaaaaacagaaaccacctcgacaaagtataccaaaactatcactattt 125  Q
    |||||||||| ||||||||| ||  |||| |||||| ||||||  | |  ||||||||||||||| |||||||||||||  |||||||||||||||||||    
T  14986903 gcagccaacacagaggcactacacagcctactgcccctcgagataacatgacaaaaaacagaaac-acctcgacaaagtccaccaaaactatcactattt 14987001  T

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Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 52 - 140
Target Start/End: Complemental strand, 26450210 - 26450122
Alignment:
Q  52 cctgctgcccttcgagaacagaccacaaaaaacagaaaccacctcgacaaagtataccaaaactatcactattttctcaaaagacaatc 140  Q
    |||||||||| |||||  || ||| ||||| ||||||||||| ||||||||||  |||||||||| |||||||||||||| ||||||||    
T  26450210 cctgctgcccctcgagggcacaccgcaaaagacagaaaccacttcgacaaagtccaccaaaactaccactattttctcaacagacaatc 26450122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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