View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10954A_low_251 (Length: 282)

Name: NF10954A_low_251
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10954A_low_251
NF10954A_low_251
[»] chr3 (1 HSPs)
chr3 (1-282)||(31718197-31718474)


Alignment Details
Target: chr3 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 282
Target Start/End: Original strand, 31718197 - 31718474
Alignment:
Q  1 ttggctgtttgttttcttgcttcccatctttagctgaacagtgggaatgatgaagatgatcttactgatgaccgggaagatcttgatgaagcgggaaatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31718197 ttggctgtttgttttcttgcttcccatctttagctgaacagtgggaatgatgaagatgatcttactgatgaccgggaagatcttgatgaagcgggaaatt 31718296  T
Q  101 cgtgtcaagatgcatcagatgaatgccttaaaagtgaatcgatcgatttccatgtgcctagccaccctcagtatgatattgaacttcaataactctttgg 200  Q
    |||||||| |||||||||||||||||||||| |||||    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  31718297 cgtgtcaatatgcatcagatgaatgccttaagagtga----atcgatttccatgtgcctagccacccccagtatgatattgaacttcaataactctttgg 31718392  T
Q  201 tttggaaatgttgtaaaatttggctgttgcattggctcttgtttcaatcttttgtggttgccgaagttaaagaaatatgaaa 282  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  31718393 tttggaaatgttgtaaaatttggctgttgcattggctcttgtttcaatcttttatggttgccgaagttaaagaaatatgaaa 31718474  T

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