View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10954A_low_254 (Length: 281)
Name: NF10954A_low_254
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_254 |
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| [»] chr1 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 16 - 281
Target Start/End: Original strand, 4775713 - 4775978
Alignment:
| Q |
16 |
atgataatctatggcaatatctttcatcctagagtgaaaaactgggtttgcacatagatatgtagctccaatgttgtctgagaatattgttggtgcagtt |
115 |
Q |
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|||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
4775713 |
atgataatctatggcaatatgcttcatcctagagtgaaagacagggtttgcacatagatatgtagctccaatgttgtcttagaatattgttggtgcagtt |
4775812 |
T |
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| Q |
116 |
aatggaatttgaagttcttgtaacaaattttgaacccatattaactcttgagtagtggctgctatagtacgatattcagcttcagttgacgattttgcaa |
215 |
Q |
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| T |
4775813 |
aatggaatttgaagttcttgtaacaagttttgaacccatattaattcttgagtagtggctgctatagtacgatattcagcttcagttgacgattttgcaa |
4775912 |
T |
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| Q |
216 |
cagttggctgcttcttgcatgaccaagagataatattagggccaaaataaattaaataagcacctg |
281 |
Q |
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| T |
4775913 |
ttgttggttgcttcttgcatgaccaagagataatattagggccaaaataaattaaataagcacctg |
4775978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 16 - 281
Target Start/End: Original strand, 43061074 - 43061339
Alignment:
| Q |
16 |
atgataatctatggcaatatctttcatcctagagtgaaaaactgggtttgcacatagatatgtagctccaatgttgtctgagaatattgttggtgcagtt |
115 |
Q |
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| T |
43061074 |
atgataatctatggcaatgtgtttcatcctatagtgaaaaacagggtttgcacatagatatgtagctctaatgttgtctgagaatatcgttggtgcagtt |
43061173 |
T |
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| Q |
116 |
aatggaatttgaagttcttgtaacaaattttgaacccatattaactcttgagtagtggctgctatagtacgatattcagcttcagttgacgattttgcaa |
215 |
Q |
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| T |
43061174 |
aatggaatttgaagttcttgtaacaagttttgaacccatattaattcctgagtagtggctgctatagtccgatattcagcttcagttgatgattttgcaa |
43061273 |
T |
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| Q |
216 |
cagttggctgcttcttgcatgaccaagagataatattagggccaaaataaattaaataagcacctg |
281 |
Q |
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| T |
43061274 |
ctgttggctgcttcttgcatgaccaagagataatattagggccaaaataaatgaaataagcacctg |
43061339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 37 - 90
Target Start/End: Complemental strand, 45192927 - 45192874
Alignment:
| Q |
37 |
tttcatcctagagtgaaaaactgggtttgcacatagatatgtagctccaatgtt |
90 |
Q |
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| T |
45192927 |
tttcatccgagagtgaaggacagggtttgcacatagatatgtagctccaatgtt |
45192874 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 96
Target Start/End: Complemental strand, 25450426 - 25450346
Alignment:
| Q |
16 |
atgataatctatggcaatatctttcatcctagagtgaaaaactgggtttgcacatagatatgtagctccaatgttgtctga |
96 |
Q |
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|||||||||||| |||| || ||||| | || |||||||||||||| |||||||||||||| || || ||||||||||| |
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| T |
25450426 |
atgataatctattgcaagatgcttcattcgagtatgaaaaactgggttcgcacatagatatgttgcaccgatgttgtctga |
25450346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 96
Target Start/End: Original strand, 2607287 - 2607367
Alignment:
| Q |
16 |
atgataatctatggcaatatctttcatcctagagtgaaaaactgggtttgcacatagatatgtagctccaatgttgtctga |
96 |
Q |
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|||||||||||| |||| || ||||| | || |||||||||||||| |||||||||||||| || || ||||||||||| |
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| T |
2607287 |
atgataatctattgcaagatgcttcattcgagtatgaaaaactgggttcgcacatagatatgttgcaccgatgttgtctga |
2607367 |
T |
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