View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10954A_low_256 (Length: 279)
Name: NF10954A_low_256
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_256 |
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Alignment Details
Target: chr5 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 43419113 - 43418837
Alignment:
| Q |
1 |
aatatctggatgtatggaaggtagccctgattaacattgcgatagcactaggttggtattccaaaacagtctaataacattgacacatagaatggcgtac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43419113 |
aatatctggatgtatggaaggtagccctgattaacattgcaatagcactaggttggtattccaaaacagtctaataacattgacacatagaatggcgtac |
43419014 |
T |
|
| Q |
101 |
ttgtataccaaccctatttttatgagatcaactgtttgttttgatcctagatgctgcctgcccttctgtttattattccatcctcttccattttattttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43419013 |
ttgtataccaaccctatttttatgagatcaactgtttgttttgatcctagatgctgcctgcccttctgtttattattccatcctcttccattttattttt |
43418914 |
T |
|
| Q |
201 |
tgaaatttgagcctatgttaagaaggcttatacaaatatgttcttgacttcaaacttttgaattcaccttccctctt |
277 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
43418913 |
tgaaatttgagcctatgttaagaaggcttatacatatatgttcttgacttcaaacttttgaattcaccttccctctt |
43418837 |
T |
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