View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10954A_low_257 (Length: 279)
Name: NF10954A_low_257
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_257 |
 | |
|
| [»] scaffold0343 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 7063069 - 7063338
Alignment:
| Q |
1 |
tcaaacttcaatccttcactaaccaccatacttgaagaagaaacaatggctggaaatgaaaacaatcagaacgttccggaaggtaatcaaagtgtgatgc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
7063069 |
tcaaacttcaatccttcactaaccaccatacttgaagaagaaacaatggctggaaatggaaacaatcaaggcgttccggaaggtaatcaaagtgtgatgc |
7063168 |
T |
|
| Q |
101 |
cttgctggacaagtccaagacgtttagcacatcttggaaaggaaaaagagaaacaagtagaactaaagttcggaactatacaacttgtttcaaatcatcc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
7063169 |
cttgctggacaagtccaagacgtttagcacatcttggaaaggaaaaagagaaacaagtagaactaaagtccggaactatacaacttgtttcaaatcatcc |
7063268 |
T |
|
| Q |
201 |
ttttgccgggctagatcatgaagatccttatcaacatctctcggtgttctatgctctcgcaaatattctt |
270 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
7063269 |
ttttgccgggctagatcatgaagatccttatcaacatctctcggtgttctatgctctcgcaaatagtctt |
7063338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 270
Target Start/End: Complemental strand, 14298534 - 14298265
Alignment:
| Q |
1 |
tcaaacttcaatccttcactaaccaccatacttgaagaagaaacaatggctggaaatgaaaacaatcagaacgttccggaaggtaatcaaagtgtgatgc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
14298534 |
tcaaacttcaatccttcactaaccaccatacttgaagaagaaacaatggctggaaatggaaacaatcaaggcgttccggaaggtaatcaaagtgtgatgg |
14298435 |
T |
|
| Q |
101 |
cttgctggacaagtccaagacgtttagcacatcttggaaaggaaaaagagaaacaagtagaactaaagttcggaactatacaacttgtttcaaatcatcc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
14298434 |
cttgctggacaagtccaagacgtttagcacatcttggaaaggaaaaagagaaacaagtagaactaaagtccggaactatacaacttgtttcaaatcatcc |
14298335 |
T |
|
| Q |
201 |
ttttgccgggctagatcatgaagatccttatcaacatctctcggtgttctatgctctcgcaaatattctt |
270 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
14298334 |
ttttgccgggctagatcatgaagatccttatcaacatctctcggtgttctatgctctcgcaaatagtctt |
14298265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0343 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: scaffold0343
Description:
Target: scaffold0343; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 270
Target Start/End: Complemental strand, 2287 - 2018
Alignment:
| Q |
1 |
tcaaacttcaatccttcactaaccaccatacttgaagaagaaacaatggctggaaatgaaaacaatcagaacgttccggaaggtaatcaaagtgtgatgc |
100 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||| || |||||||||||||||||||||||||| |
|
|
| T |
2287 |
tcaaccttcaatccttcactaatcaccatacttgaagaagaaacaatggctgcaaatggaaacaatcaagacactccggaaggtaatcaaagtgtgatgc |
2188 |
T |
|
| Q |
101 |
cttgctggacaagtccaagacgtttagcacatcttggaaaggaaaaagagaaacaagtagaactaaagttcggaactatacaacttgtttcaaatcatcc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |
|
|
| T |
2187 |
cttgctggacaagtccaagacgtttagcacatcttggaaaggaaaaagagaaacaagtagaactaaattccggaactatacaacttgtttcaaatcatcc |
2088 |
T |
|
| Q |
201 |
ttttgccgggctagatcatgaagatccttatcaacatctctcggtgttctatgctctcgcaaatattctt |
270 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
2087 |
ttttgccgggctagatcatgaagatccttatcaacatctctcggtgttctatgctctcgcaaatagtctt |
2018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 75 - 155
Target Start/End: Original strand, 17785088 - 17785168
Alignment:
| Q |
75 |
tccggaaggtaatcaaagtgtgatgccttgctggacaagtccaagacgtttagcacatcttggaaaggaaaaagagaaaca |
155 |
Q |
| |
|
||||||||| || |||||||||||||| ||||||| |||||||||||| |||| ||||||||||| ||||| |||||||| |
|
|
| T |
17785088 |
tccggaaggcaaccaaagtgtgatgccatgctggataagtccaagacggctagctcatcttggaaaagaaaaggagaaaca |
17785168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 75 - 155
Target Start/End: Original strand, 11910602 - 11910682
Alignment:
| Q |
75 |
tccggaaggtaatcaaagtgtgatgccttgctggacaagtccaagacgtttagcacatcttggaaaggaaaaagagaaaca |
155 |
Q |
| |
|
||||||||| || |||||||||||||| |||| || |||||||||| | ||| ||||||||||| || ||||||||||| |
|
|
| T |
11910602 |
tccggaaggcaaccaaagtgtgatgccatgctagataagtccaagatggctaggtcatcttggaaaagagaaagagaaaca |
11910682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University