View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10954A_low_259 (Length: 278)
Name: NF10954A_low_259
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_259 |
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Alignment Details
Target: chr7 (Bit Score: 230; Significance: 1e-127; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 266
Target Start/End: Complemental strand, 7310243 - 7309978
Alignment:
| Q |
1 |
tattctataaatctgatcacaaagtctgatgcatccagttctgatttagggtcatgttactaatgcatctgaaaatgaattagaagagtttcggaaactt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |
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| T |
7310243 |
tattctataaatctgatcacaaagtctgatgcatccagttctgatttagggtcatgttactgatgcatctgaaaatgaattagaagaacttcggaaactt |
7310144 |
T |
|
| Q |
101 |
gagaatggggaaaactctattatcaaattccatctttcccaagttaattacctcctttgtacagatctgattgttccaagtactacattttgtaacttgt |
200 |
Q |
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||||| |||||||||| |||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| ||||||||||||||||||| |
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| T |
7310143 |
gagaaaggggaaaactttattatcaaattccatctttcccaagttaattacttcctttgttcagatctgattgttccaagcactacattttgtaacttgt |
7310044 |
T |
|
| Q |
201 |
gggcaggctataatcttgagaataatgaaacacttcacatgatttactgtgtttctgtcctatttt |
266 |
Q |
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| T |
7310043 |
tggcaggctataatcttgagaataatgaaacacttcacatgatttactgtgtttctgtcctatttt |
7309978 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 7329737 - 7329857
Alignment:
| Q |
1 |
tattctataaatctgatcacaaagtctgatgcatccagttctgatttagggtcatgttactaatgcatctgaaaatgaattagaagagtttcggaaactt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| ||||| |||||||| | | || || |||||||| |
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| T |
7329737 |
tattctataaatctgatcacaaagtctgatgcatccagttctgatttaaggtcatgtaactaatgaatctg-aaatgaatgaaatgaactttggaaactt |
7329835 |
T |
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| Q |
101 |
gagaatggggaaaactctatta |
122 |
Q |
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||||||| |||||||||||||| |
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| T |
7329836 |
gagaatgaggaaaactctatta |
7329857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 23 - 77
Target Start/End: Complemental strand, 7300897 - 7300843
Alignment:
| Q |
23 |
agtctgatgcatccagttctgatttagggtcatgttactaatgcatctgaaaatg |
77 |
Q |
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| T |
7300897 |
agtctgatgcatccagttctgatttagggtcatgttactaatgcatccgaaaatg |
7300843 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 77
Target Start/End: Original strand, 13898963 - 13899003
Alignment:
| Q |
37 |
agttctgatttagggtcatgttactaatgcatctgaaaatg |
77 |
Q |
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| T |
13898963 |
agttctgatttagggtcaagttactaatgcatatgaaaatg |
13899003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 37 - 76
Target Start/End: Original strand, 13569143 - 13569182
Alignment:
| Q |
37 |
agttctgatttagggtcatgttactaatgcatctgaaaat |
76 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| ||||||| |
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|
| T |
13569143 |
agttctgatttagggtcaagttactaatgcatatgaaaat |
13569182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 207 - 248
Target Start/End: Original strand, 7329932 - 7329973
Alignment:
| Q |
207 |
gctataatcttgagaataatgaaacacttcacatgatttact |
248 |
Q |
| |
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||||||| ||||||||| |||||||||||||||| ||||||| |
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|
| T |
7329932 |
gctataaacttgagaatgatgaaacacttcacatcatttact |
7329973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 77
Target Start/End: Complemental strand, 24552799 - 24552759
Alignment:
| Q |
37 |
agttctgatttagggtcatgttactaatgcatctgaaaatg |
77 |
Q |
| |
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|||||||||||||||||| ||||||||||||| |||||||| |
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| T |
24552799 |
agttctgatttagggtcaagttactaatgcatatgaaaatg |
24552759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 73
Target Start/End: Original strand, 23964003 - 23964039
Alignment:
| Q |
37 |
agttctgatttagggtcatgttactaatgcatctgaa |
73 |
Q |
| |
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|||||||||||||| ||| |||||||||||||||||| |
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| T |
23964003 |
agttctgatttaggctcaagttactaatgcatctgaa |
23964039 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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