View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10954A_low_263 (Length: 277)
Name: NF10954A_low_263
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_263 |
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Alignment Details
Target: chr4 (Bit Score: 118; Significance: 3e-60; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 17 - 271
Target Start/End: Original strand, 24511574 - 24511831
Alignment:
| Q |
17 |
acatcattggctataataaaggaaataagtcgtattgtactgcaatactacaagtcaaacaaacnnnnnnngtggtattgtactgcactatgnnnnnnnn |
116 |
Q |
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| T |
24511574 |
acatcattggctataataaaggaaataagtcgtattgtactgcaatactacaagtcaaacaaacaaaaaaagtcgtattgtactgcactatgtttttttt |
24511673 |
T |
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| Q |
117 |
n---aattatgaatgaatannnnnnnaattatgaataaat-gggcttaaactctaaccacaagaacaataagcaaaagactaaa-acttataggaagtaa |
211 |
Q |
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|||||||||| |||| |||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| | |
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| T |
24511674 |
ttttaattatgaataaatatttttttaattatgaataaatagggcttaaactctaacca--agaacaataagcaaaagactaaatacttataggaagtga |
24511771 |
T |
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| Q |
212 |
aagagttcctatcggtcatctagaaaaacaaaactacaactaagatgtatcccattaaat |
271 |
Q |
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|||||||||||||||||| | || ||||||||||||||||||||||||||||| ||||| |
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| T |
24511772 |
aagagttcctatcggtcaacaagggaaacaaaactacaactaagatgtatcccactaaat |
24511831 |
T |
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