View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10954A_low_267 (Length: 274)
Name: NF10954A_low_267
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_267 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 183; Significance: 5e-99; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 1 - 268
Target Start/End: Complemental strand, 25808767 - 25808498
Alignment:
| Q |
1 |
aagagtataaagatggtggagtgttccttcaaactaagtttacacaca--attaatgaaaacactcaaaattgttatattaggttnnnnnnnnnnnnnnn |
98 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
25808767 |
aagagtataaagatggtggagtgttccttcaaactaagtttacacacacaattaatgaaaacactcaaaattgttatattaggttaaaaaaaaataaaaa |
25808668 |
T |
|
| Q |
99 |
ngaattatgatgttaacttccaattgttttcattggttgtatatccaaaattgatttgaattagtccacgacttttaaactcttataaaaatcaaattaa |
198 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25808667 |
agaattatgatgttaacttccaagtgttttcattggttgtatatccaaaattgatttgaattagtccacgacttttaaactcttataaaaatcaaattaa |
25808568 |
T |
|
| Q |
199 |
gaatataaatgtcattcagaaaagnnnnnnnntcgttttctctctttctaataatattgagataaaaaat |
268 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25808567 |
gaatataaatgtcattcagaaaagaaaaaaaatcgttttctctctttctaataatattgagataaaaaat |
25808498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University