View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10954A_low_268 (Length: 274)
Name: NF10954A_low_268
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_268 |
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Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 9 - 268
Target Start/End: Original strand, 40888722 - 40888981
Alignment:
| Q |
9 |
aacatagacaaattgcgattgttaataattcttgtagatagtaggcaaggaatgtatatttagaaaagagaaaacggaataggctgatagctattcccct |
108 |
Q |
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| T |
40888722 |
aacacagacaaattgcaattgttaataattcttgtagatagtatgcaaggaatgtatatttagaaaagagaaaacggaataggctgatagttattcccct |
40888821 |
T |
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| Q |
109 |
gtataaaaaactatatttaagaatatgaaaattagatcagactggattagtctgactggtcaaactgtgaaccatttcattgggtggttccgtctaagtg |
208 |
Q |
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| T |
40888822 |
gaataaaaaactatatttaagaatatgaaaattagatcagactggattagtctgactggtcaaactgtgaaccatttcattgggtggttccgtctaagtg |
40888921 |
T |
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| Q |
209 |
tttaacttctctaaccggtaatttaaaaatcagttattgaaccaccgcactggttgcaaa |
268 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40888922 |
tttaacttctctaaccggtaatttaaaaatcagttattgaaccaccgcactggttgcaaa |
40888981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 9 - 268
Target Start/End: Original strand, 44139952 - 44140211
Alignment:
| Q |
9 |
aacatagacaaattgcgattgttaataattcttgtagatagtaggcaaggaatgtatatttagaaaagagaaaacggaataggctgatagctattcccct |
108 |
Q |
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|||| ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
44139952 |
aacacagacaaattgcaattgttaataattcttgtagatagtatgcaaggaatgtatatttagaaaagagaaaacggaataggctgatagttattcccct |
44140051 |
T |
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| Q |
109 |
gtataaaaaactatatttaagaatatgaaaattagatcagactggattagtctgactggtcaaactgtgaaccatttcattgggtggttccgtctaagtg |
208 |
Q |
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| T |
44140052 |
gaataaaaaactatatttaagaatatgaaaattagatcagactggattagtctgactggtcaaactgtgaaccatttcattgggtggttcagtctaagtc |
44140151 |
T |
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| Q |
209 |
tttaacttctctaaccggtaatttaaaaatcagttattgaaccaccgcactggttgcaaa |
268 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44140152 |
tttaacttctctaaccggtaatttaaaaatcagttattgaaccaccgcactggttgcaaa |
44140211 |
T |
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